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6W3F
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BU of 6w3f by Molmil
Rd1NTF2_05_I64F_A80G_T94P_D101K_L106W
分子名称: Rd1NTF2_05_I64F_A80G_T94P_D101K_L106W
著者Bick, M.J, Basanta, B, Sankaran, B, Baker, D.
登録日2020-03-09
公開日2020-04-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献An enumerative algorithm for de novo design of proteins with diverse pocket structures.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W40
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BU of 6w40 by Molmil
An enumerative algorithm for de novo design of proteins with diverse pocket structures
分子名称: DENOVO NTF2
著者Bera, A.K, Basanta, B, Sankaran, B, Baker, D.
登録日2020-03-09
公開日2020-04-08
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献An enumerative algorithm for de novo design of proteins with diverse pocket structures.
Proc.Natl.Acad.Sci.USA, 117, 2020
7TXZ
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BU of 7txz by Molmil
Nipah Virus attachment (G) glycoprotein ectodomain in complex with nAH1.3 neutralizing antibody Fab fragment (local refinement of the distal region)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Wang, Z.Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
登録日2022-02-10
公開日2022-03-09
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Architecture and antigenicity of the Nipah virus attachment glycoprotein.
Science, 375, 2022
7TY0
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BU of 7ty0 by Molmil
Nipah Virus attachment (G) glycoprotein ectodomain in complex with nAH1.3 neutralizing antibody Fab fragment (local refinement of the stalk region)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Wang, Z.Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
登録日2022-02-10
公開日2022-03-09
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Architecture and antigenicity of the Nipah virus attachment glycoprotein.
Science, 375, 2022
7TJL
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BU of 7tjl by Molmil
Crystal structure of de novo designed protein, SEWN0.1
分子名称: De novo designed protein, SEWN0.1
著者Cummins, M.C, Jacobs, T.M, Kuhlman, B.
登録日2022-01-16
公開日2022-06-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献AlphaFold accurately predicts distinct conformations based on the oligomeric state of a de novo designed protein
Protein Sci., 31, 2022
6MRR
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BU of 6mrr by Molmil
De novo designed protein Foldit1
分子名称: Foldit1
著者Koepnick, B, Bick, M.J, Estep, R.D, Kleinfelter, S, Wei, L, Baker, D.
登録日2018-10-15
公開日2019-06-12
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献De novo protein design by citizen scientists.
Nature, 570, 2019
6MRS
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BU of 6mrs by Molmil
De novo designed protein Peak6
分子名称: Peak6, SULFATE ION
著者Koepnick, B, Boykov, A, Baker, D.
登録日2018-10-15
公開日2019-06-12
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.541 Å)
主引用文献De novo protein design by citizen scientists.
Nature, 570, 2019
6MSP
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BU of 6msp by Molmil
De novo Designed Protein Foldit3
分子名称: De novo Designed Protein Foldit3
著者Liu, G, Ishida, Y, Swapna, G.V.T, Kleinfelter, S, Koepnick, B, Baker, D, Montelione, G.T.
登録日2018-10-17
公開日2019-06-12
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献De novo protein design by citizen scientists.
Nature, 570, 2019
4KYZ
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BU of 4kyz by Molmil
Three-dimensional structure of triclinic form of de novo design insertion domain, Northeast Structural Genomics Consortium (NESG) Target OR327
分子名称: Designed protein OR327
著者Kuzin, A, Su, M, Seetharaman, J, Maglaqui, M, Xiao, R, Lee, D, Gleixner, J, Baker, D, Everett, J.K, Acton, T.B, Kornhaber, G, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2013-05-29
公開日2013-07-24
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.492 Å)
主引用文献Precise assembly of complex beta sheet topologies from de novo designed building blocks.
Elife, 4, 2015
4MEE
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BU of 4mee by Molmil
Crystal structure of the transport unit of the autotransporter AIDA-I from Escherichia coli
分子名称: Diffuse adherence adhesin
著者Gawarzewski, I, Tschapek, B, Hoeppner, A, Smits, S.H, Jose, J, Schmitt, L.
登録日2013-08-26
公開日2014-06-04
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of the transport unit of the autotransporter adhesin involved in diffuse adherence from Escherichia coli.
J.Struct.Biol., 187, 2014
4L11
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BU of 4l11 by Molmil
Structure of the C-linker/CNBHD of agERG channels
分子名称: AGAP007709-PA
著者Brelidze, T.I.
登録日2013-06-01
公開日2013-06-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structure of the C-terminal region of an ERG channel and functional implications.
Proc.Natl.Acad.Sci.USA, 110, 2013
4KY3
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BU of 4ky3 by Molmil
Three-dimensional Structure of the orthorhombic crystal of computationally designed insertion domain , Northeast Structural Genomics Consortium (NESG) Target OR327
分子名称: designed protein OR327
著者Kuzin, A, Su, M, Seetharaman, J, Maglaqui, M, Xiao, R, Lee, D, Gleixner, J, Baker, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2013-05-28
公開日2013-06-19
最終更新日2016-02-17
実験手法X-RAY DIFFRACTION (2.964 Å)
主引用文献Precise assembly of complex beta sheet topologies from de novo designed building blocks.
Elife, 4, 2015
6DMA
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BU of 6dma by Molmil
DHD15_closed
分子名称: DHD15_closed_A, DHD15_closed_B
著者Bick, M.J, Chen, Z, Baker, D.
登録日2018-06-04
公開日2018-12-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.363 Å)
主引用文献Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DKM
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BU of 6dkm by Molmil
DHD131
分子名称: DHD131_A, DHD131_B
著者Bick, M.J, Chen, Z, Baker, D.
登録日2018-05-29
公開日2018-12-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DMP
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BU of 6dmp by Molmil
De Novo Design of a Protein Heterodimer with Specificity Mediated by Hydrogen Bond Networks
分子名称: Designed orthogonal protein DHD13_XAAA_A, Designed orthogonal protein DHD13_XAAA_B
著者Chen, Z, Flores-Solis, D, Sgourakis, N.G, Baker, D.
登録日2018-06-05
公開日2018-12-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DLM
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BU of 6dlm by Molmil
DHD127
分子名称: DHD127_A, DHD127_B
著者Bick, M.J, Chen, Z, Baker, D.
登録日2018-06-01
公開日2018-12-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.753 Å)
主引用文献Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DM9
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BU of 6dm9 by Molmil
DHD15_extended
分子名称: DHD15_extended_A, DHD15_extended_B, SULFATE ION
著者Bick, M.J, Chen, Z, Baker, D.
登録日2018-06-04
公開日2018-12-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DLC
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BU of 6dlc by Molmil
Designed protein DHD1:234_A, Designed protein DHD1:234_B
分子名称: Designed protein DHD1:234_A, Designed protein DHD1:234_B
著者Bick, M.J, Chen, Z, Baker, D.
登録日2018-05-31
公開日2018-12-26
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.261 Å)
主引用文献Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
3QD9
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BU of 3qd9 by Molmil
C72S/C353S mutant of Trypanosoma brucei QSOX containing an interdomain disulfide
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, QSOX from Trypanosoma brucei (TbQSOX)
著者Alon, A, Fass, D.
登録日2011-01-18
公開日2012-05-30
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献The dynamic disulphide relay of quiescin sulphydryl oxidase.
Nature, 488, 2012
3T58
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BU of 3t58 by Molmil
C76A/C455S mutant of mouse QSOX1 containing an interdomain disulfide
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Sulfhydryl oxidase 1
著者Fass, D, Alon, A, Gat, Y.
登録日2011-07-27
公開日2012-05-30
最終更新日2012-08-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The dynamic disulphide relay of quiescin sulphydryl oxidase.
Nature, 488, 2012
3T59
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BU of 3t59 by Molmil
C76A/C455S mutant of mouse QSOX1 containing an interdomain disulfide
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Sulfhydryl oxidase 1
著者Fass, D, Alon, A, Gat, Y.
登録日2011-07-27
公開日2012-05-30
最終更新日2012-08-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The dynamic disulphide relay of quiescin sulphydryl oxidase.
Nature, 488, 2012
3QCP
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BU of 3qcp by Molmil
QSOX from Trypanosoma brucei
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, QSOX from Trypanosoma brucei (TbQSOX)
著者Alon, A, Fass, D.
登録日2011-01-17
公開日2012-05-30
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The dynamic disulphide relay of quiescin sulphydryl oxidase.
Nature, 488, 2012
5V7V
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BU of 5v7v by Molmil
Cryo-EM structure of ERAD-associated E3 ubiquitin-protein ligase component HRD3
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ERAD-associated E3 ubiquitin-protein ligase component HRD3, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Mi, W, Schoebel, S, Stein, A, Rapoport, T.A, Liao, M.
登録日2017-03-20
公開日2017-08-16
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3.
Nature, 548, 2017
5V6P
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BU of 5v6p by Molmil
CryoEM structure of the ERAD-associated E3 ubiquitin-protein ligase HRD1
分子名称: ERAD-associated E3 ubiquitin-protein ligase HRD1
著者Schoebel, S, Mi, W, Stein, A, Rapoport, T.A, Liao, M.
登録日2017-03-17
公開日2017-08-16
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3.
Nature, 548, 2017
6BAA
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BU of 6baa by Molmil
Cryo-EM structure of the pancreatic beta-cell KATP channel bound to ATP and glibenclamide
分子名称: 5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide, ADENOSINE-5'-TRIPHOSPHATE, ATP-binding cassette sub-family C member 8, ...
著者Martin, G.M, Yoshioka, C, Shyng, S.L.
登録日2017-10-12
公開日2017-11-01
最終更新日2019-12-25
実験手法ELECTRON MICROSCOPY (3.63 Å)
主引用文献Anti-diabetic drug binding site in a mammalian KATPchannel revealed by Cryo-EM.
Elife, 6, 2017

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