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1VCG
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BU of 1vcg by Molmil
Crystal Structure of IPP isomerase at P43212
分子名称: FLAVIN MONONUCLEOTIDE, isopentenyl-diphosphate delta-isomerase
著者Wada, T, Park, S.-Y, Tame, R.H, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-08
公開日2005-04-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.02 Å)
主引用文献Crystal Structure of IPP isomerase at P43212
To be Published
1V9F
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BU of 1v9f by Molmil
Crystal structure of catalytic domain of pseudouridine synthase RluD from Escherichia coli
分子名称: PHOSPHATE ION, Ribosomal large subunit pseudouridine synthase D
著者Mizutani, K, Machida, Y, Unzai, S, Park, S.-Y, Tame, J.R.H.
登録日2004-01-26
公開日2004-05-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli
Biochemistry, 43, 2004
1IWJ
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BU of 1iwj by Molmil
Putidaredoxin-Binding Stablilizes an Active Conformer of Cytochrome P450cam in its Reduced State; Crystal Structure of Mutant(109K) Cytochrome P450cam
分子名称: CAMPHOR, CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE
著者Nagano, S, Shimada, H, Tarumi, A, Hishiki, T, Kimata-Ariga, Y, Egawa, T, Park, S.-Y, Adachi, S, Shiro, Y, Ishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-05-15
公開日2002-06-05
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
1V9K
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BU of 1v9k by Molmil
The crystal structure of the catalytic domain of pseudouridine synthase RluC from Escherichia coli
分子名称: Ribosomal large subunit pseudouridine synthase C, SULFATE ION
著者Machida, Y, Mizutani, K, Unzai, S, Park, S.-Y, Tame, J.R.H.
登録日2004-01-26
公開日2004-05-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli
Biochemistry, 43, 2004
2ROM
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BU of 2rom by Molmil
CRYSTAL STRUCTURE OF NITRIC REDUCTASE FROM DENITRIFYING FUNGUS FUSARIUM OXYSPORUM COMPLEX WITH CARBON MONOXIDE
分子名称: CARBON MONOXIDE, CYTOCHROME P450, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Nakagawa, A.
登録日1997-03-24
公開日1997-10-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of nitric oxide reductase from denitrifying fungus Fusarium oxysporum.
Nat.Struct.Biol., 4, 1997
3WX7
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BU of 3wx7 by Molmil
Crystal structure of COD
分子名称: ACETATE ION, CALCIUM ION, Chitin oligosaccharide deacetylase, ...
著者Park, S.-Y, Sugiyama, K, Hirano, T, Nishio, T.
登録日2014-07-18
公開日2014-12-03
最終更新日2019-04-03
実験手法X-RAY DIFFRACTION (1.349 Å)
主引用文献Structure-based analysis of domain function of chitin oligosaccharide deacetylase from Vibrio parahaemolyticus.
FEBS Lett., 589, 2015
1CL6
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BU of 1cl6 by Molmil
CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND ITS SER286 MUTANTS AT CRYOGENIC TEMPERATURE
分子名称: CYTOCHROME P450, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Shiro, Y.
登録日1999-05-06
公開日2000-03-22
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Proton delivery in NO reduction by fungal nitric-oxide reductase. Cryogenic crystallography, spectroscopy, and kinetics of ferric-NO complexes of wild-type and mutant enzymes.
J.Biol.Chem., 275, 2000
1CMN
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BU of 1cmn by Molmil
CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE
分子名称: CYTOCHROME P450, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Shiro, Y.
登録日1999-05-07
公開日2000-03-22
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Proton delivery in NO reduction by fungal nitric-oxide reductase. Cryogenic crystallography, spectroscopy, and kinetics of ferric-NO complexes of wild-type and mutant enzymes.
J.Biol.Chem., 275, 2000
1CMJ
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BU of 1cmj by Molmil
CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE
分子名称: CYTOCHROME P450, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Shiro, Y.
登録日1999-05-07
公開日2000-03-22
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Proton delivery in NO reduction by fungal nitric-oxide reductase. Cryogenic crystallography, spectroscopy, and kinetics of ferric-NO complexes of wild-type and mutant enzymes.
J.Biol.Chem., 275, 2000
8EY0
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BU of 8ey0 by Molmil
Structure of an orthogonal PYR1*:HAB1* chemical-induced dimerization module in complex with mandipropamid
分子名称: (2S)-2-(4-chlorophenyl)-N-{2-[3-methoxy-4-(prop-2-yn-1-yloxy)phenyl]ethyl}-2-(prop-2-yn-1-yloxy)ethanamide, Abscisic acid receptor PYR1, GLYCEROL, ...
著者Park, S.-Y, Volkman, B.F, Cutler, S.R, Peterson, F.C.
登録日2022-10-26
公開日2023-11-08
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献An orthogonalized PYR1-based CID module with reprogrammable ligand-binding specificity.
Nat.Chem.Biol., 20, 2024
4N7Z
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BU of 4n7z by Molmil
Crystal structure of human Plk4 cryptic polo box (CPB) in complex with a Cep192 N-terminal fragment
分子名称: Centrosomal protein of 192 kDa, Serine/threonine-protein kinase PLK4
著者Park, S.-Y, Park, J.-E, Tian, L, Kim, T.-S, Yang, W, Lee, K.S.
登録日2013-10-16
公開日2014-07-02
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Molecular basis for unidirectional scaffold switching of human Plk4 in centriole biogenesis.
Nat.Struct.Mol.Biol., 21, 2014
4N7V
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BU of 4n7v by Molmil
Crystal structure of human Plk4 cryptic polo box (CPB) in complex with a Cep152 N-terminal fragment
分子名称: Centrosomal protein of 152 kDa, Serine/threonine-protein kinase PLK4
著者Park, S.-Y, Park, J.-E, Tian, L, Kim, T.-S, Yang, W, Lee, K.S.
登録日2013-10-16
公開日2014-07-02
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.758 Å)
主引用文献Molecular basis for unidirectional scaffold switching of human Plk4 in centriole biogenesis.
Nat.Struct.Mol.Biol., 21, 2014
5Y6C
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BU of 5y6c by Molmil
Crystal structure of ZmASCH S128A mutant protein from Zymomonas mobilis
分子名称: CHLORIDE ION, Helix-turn-helix domain-containing protein
著者Park, S.-Y, Kim, J.-S.
登録日2017-08-11
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.398 Å)
主引用文献Crystal structure of an ASCH protein from Zymomonas mobilis and its ribonuclease activity specific for single-stranded RNA.
Sci Rep, 7, 2017
5Y6B
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BU of 5y6b by Molmil
Crystal structure of ZmASCH Y47F mutant protein from Zymomonas mobilis
分子名称: Helix-turn-helix domain-containing protein
著者Park, S.-Y, Kim, J.-S.
登録日2017-08-11
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of an ASCH protein from Zymomonas mobilis and its ribonuclease activity specific for single-stranded RNA.
Sci Rep, 7, 2017
1IO8
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BU of 1io8 by Molmil
Thermophilic cytochrome P450 (CYP119) from sulfolobus solfataricus: High resolution structural origin of its thermostability and functional properties
分子名称: CYTOCHROME P450 CYP119, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Yamane, K, Adachi, S, Shiro, Y, Sligar, S.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-02-08
公開日2001-03-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties
J.Inorg.Biochem., 91, 2002
1ROM
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BU of 1rom by Molmil
CRYSTAL STRUCTURE OF NITRIC REDUCTASE FROM DENITRIFYING FUNGUS FUSARIUM OXYSPORUM
分子名称: CYTOCHROME P450, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Nakagawa, A.
登録日1997-03-24
公開日1997-10-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of nitric oxide reductase from denitrifying fungus Fusarium oxysporum.
Nat.Struct.Biol., 4, 1997
1IO7
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BU of 1io7 by Molmil
THERMOPHILIC CYTOCHROME P450 (CYP119) FROM SULFOLOBUS SOLFATARICUS: HIGH RESOLUTION STRUCTURAL ORIGIN OF ITS THERMOSTABILITY AND FUNCTIONAL PROPERTIES
分子名称: CYTOCHROME P450 CYP119, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Yamane, K, Adachi, S, Shiro, Y, Sligar, S.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-02-08
公開日2001-02-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties.
J.Inorg.Biochem., 91, 2002
1IO9
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BU of 1io9 by Molmil
THERMOPHILIC CYTOCHROME P450 (CYP119) FROM SULFOLOBUS SOLFATARICUS: HIGH RESOLUTION STRUCTURAL ORIGIN OF ITS THERMOSTABILITY AND FUNCTIONAL PROPERTIES
分子名称: CYTOCHROME P450 CYP119, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Yamane, K, Adachi, S, Shiro, Y, Sligar, S.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-02-08
公開日2001-03-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties.
J.Inorg.Biochem., 91, 2002
4EU2
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BU of 4eu2 by Molmil
Crystal structure of 20s proteasome with novel inhibitor K-7174
分子名称: 1,4-bis[(4E)-5-(3,4,5-trimethoxyphenyl)pent-4-en-1-yl]-1,4-diazepane, Proteasome component C1, Proteasome component C11, ...
著者Kikuchi, J, Shibayama, N, Yamada, S, Wada, T, Nobuyoshi, M, Izumi, T, Akutsu, M, Kano, Y, Ohki, M, Sugiyama, K, Park, S.-Y, Furukawa, Y.
登録日2012-04-25
公開日2013-05-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.509 Å)
主引用文献Homopiperazine derivatives as a novel class of proteasome inhibitors with a unique mode of proteasome binding.
Plos One, 8, 2013
6LF1
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SeviL, a GM1b/asialo-GM1 binding lectin
分子名称: CHLORIDE ION, SeviL
著者Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H.
登録日2019-11-28
公開日2020-12-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020
6LF2
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SeviL bound to asialo-GM1 saccharide
分子名称: SeviL, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H.
登録日2019-11-28
公開日2020-12-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020
2W8N
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BU of 2w8n by Molmil
The crystal structure of the oxidized form of human SSADH
分子名称: SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL, SULFATE ION
著者Kim, Y.-G, Kim, K.-J.
登録日2009-01-19
公開日2009-06-09
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Redox-Switch Modulation of Human Ssadh by Dynamic Catalytic Loop.
Embo J., 28, 2009
2W8R
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BU of 2w8r by Molmil
The crystal structure of human SSADH in complex with NAD+
分子名称: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, ...
著者Kim, Y.-G, Kim, K.-J.
登録日2009-01-19
公開日2009-06-09
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Redox-Switch Modulation of Human Ssadh by Dynamic Catalytic Loop.
Embo J., 28, 2009
2W8O
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BU of 2w8o by Molmil
The crystal structure of the reduced form of human SSADH
分子名称: GLYCEROL, SUCCINIC SEMIALDEHYDE DEHYDROGENASE MITOCHONDRIAL, SULFATE ION
著者Kim, Y.-G, Kim, K.-J.
登録日2009-01-19
公開日2009-06-09
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Redox-Switch Modulation of Human Ssadh by Dynamic Catalytic Loop.
Embo J., 28, 2009
2W8P
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BU of 2w8p by Molmil
The crystal structure of human C340A SSADH
分子名称: GLYCEROL, SUCCINIC SEMIALDEHYDE DEHYDROGENASE MITOCHONDRIAL, SULFATE ION
著者Kim, Y.-G, Kim, K.-J.
登録日2009-01-19
公開日2009-06-09
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Redox-Switch Modulation of Human Ssadh by Dynamic Catalytic Loop.
Embo J., 28, 2009

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