6AFJ
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![BU of 6afj by Molmil](/molmil-images/mine/6afj) | DJ-1 with compound 13 | 分子名称: | CHLORIDE ION, Protein/nucleic acid deglycase DJ-1, butyl 2-[2,3-bis(oxidanylidene)indol-1-yl]ethanoate | 著者 | Caaveiro, J.M.M, Tashiro, S, Tsumoto, K. | 登録日 | 2018-08-08 | 公開日 | 2018-08-29 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.48 Å) | 主引用文献 | Discovery and Optimization of Inhibitors of the Parkinson's Disease Associated Protein DJ-1. ACS Chem. Biol., 13, 2018
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5AZ2
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![BU of 5az2 by Molmil](/molmil-images/mine/5az2) | Crystal structure of the Fab fragment of 9E5, a murine monoclonal antibody specific for human epiregulin | 分子名称: | anti-human epiregulin antibody 9E5 Fab heavy chain, anti-human epiregulin antibody 9E5 Fab light chain | 著者 | Kado, Y, Mizohata, E, Nagatoishi, S, Iijima, M, Shinoda, K, Miyafusa, T, Nakayama, T, Yoshizumi, T, Sugiyama, A, Kawamura, T, Lee, Y.H, Matsumura, H, Doi, H, Fujitani, H, Kodama, T, Shibasaki, Y, Tsumoto, K, Inoue, T. | 登録日 | 2015-09-16 | 公開日 | 2015-12-09 | 最終更新日 | 2020-02-26 | 実験手法 | X-RAY DIFFRACTION (1.603 Å) | 主引用文献 | Epiregulin Recognition Mechanisms by Anti-epiregulin Antibody 9E5: STRUCTURAL, FUNCTIONAL, AND MOLECULAR DYNAMICS SIMULATION ANALYSES J.Biol.Chem., 291, 2016
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5BPG
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![BU of 5bpg by Molmil](/molmil-images/mine/5bpg) | |
5BTQ
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![BU of 5btq by Molmil](/molmil-images/mine/5btq) | Crystal structure of human heme oxygenase 1 H25R with biliverdin bound | 分子名称: | BILIVERDINE IX ALPHA, Heme oxygenase 1, SULFATE ION | 著者 | Caaveiro, J.M.M, Morante, K, Sigala, P, Tsumoto, K. | 登録日 | 2015-06-03 | 公開日 | 2016-06-08 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.08 Å) | 主引用文献 | In-Cell Enzymology To Probe His-Heme Ligation in Heme Oxygenase Catalysis Biochemistry, 55, 2016
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8HLB
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![BU of 8hlb by Molmil](/molmil-images/mine/8hlb) | Cryo-EM structure of biparatopic antibody Bp109-92 in complex with TNFR2 | 分子名称: | TR109 heavy chain, TR109 light chain, TR92 heavy chain, ... | 著者 | Akiba, H, Fujita, J, Ise, T, Nishiyama, K, Miyata, T, Kato, T, Namba, K, Ohno, H, Kamada, H, Nagata, S, Tsumoto, K. | 登録日 | 2022-11-29 | 公開日 | 2023-10-04 | 実験手法 | ELECTRON MICROSCOPY (3.63 Å) | 主引用文献 | Development of a 1:1-binding biparatopic anti-TNFR2 antagonist by reducing signaling activity through epitope selection. Commun Biol, 6, 2023
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5CIN
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![BU of 5cin by Molmil](/molmil-images/mine/5cin) | Crystal Structure of non-neutralizing version of 4E10 (DeltaLoop) with epitope bound | 分子名称: | CHLORIDE ION, FAB 4E10 HEAVY CHAIN, FAB 4E10 LIGHT CHAIN, ... | 著者 | Caaveiro, J.M.M, Rujas, E, Nieva, J.L, Tsumoto, K. | 登録日 | 2015-07-13 | 公開日 | 2015-09-23 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Structural and Thermodynamic Basis of Epitope Binding by Neutralizing and Nonneutralizing Forms of the Anti-HIV-1 Antibody 4E10 J.Virol., 89, 2015
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6K2G
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5CIP
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![BU of 5cip by Molmil](/molmil-images/mine/5cip) | Crystal Structure of Unbound 4E10 | 分子名称: | FAB 4E10 HEAVY CHAIN, FAB 4E10 LIGHT CHAIN | 著者 | Caaveiro, J.M.M, Rujas, E, Nieva, J.L, Tsumoto, K. | 登録日 | 2015-07-13 | 公開日 | 2015-09-23 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.48 Å) | 主引用文献 | Structural and Thermodynamic Basis of Epitope Binding by Neutralizing and Nonneutralizing Forms of the Anti-HIV-1 Antibody 4E10 J.Virol., 89, 2015
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5CIL
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![BU of 5cil by Molmil](/molmil-images/mine/5cil) | Crystal Structure of non-neutralizing version of 4E10 (WDWD) with epitope bound | 分子名称: | ACETATE ION, CHLORIDE ION, FAB 4E10 HEAVY CHAIN, ... | 著者 | Caaveiro, J.M.M, Rujas, E, Nieva, J.L, Tsumoto, K. | 登録日 | 2015-07-13 | 公開日 | 2015-09-23 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.81 Å) | 主引用文献 | Structural and Thermodynamic Basis of Epitope Binding by Neutralizing and Nonneutralizing Forms of the Anti-HIV-1 Antibody 4E10 J.Virol., 89, 2015
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3VTM
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![BU of 3vtm by Molmil](/molmil-images/mine/3vtm) | Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Indium-porphyrin | 分子名称: | GLYCEROL, Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING INDIUM | 著者 | Vu, N.T, Caaveiro, J.M.M, Moriwaki, Y, Tsumoto, K. | 登録日 | 2012-05-31 | 公開日 | 2013-05-15 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Selective binding of antimicrobial porphyrins to the heme-receptor IsdH-NEAT3 of Staphylococcus aureus Protein Sci., 22, 2013
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6JB2
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![BU of 6jb2 by Molmil](/molmil-images/mine/6jb2) | Crystal structure of nanobody D3-L11 mutant Y102A in complex with hen egg-white lysozyme | 分子名称: | CHLORIDE ION, GLYCEROL, Lysozyme C, ... | 著者 | Caaveiro, J.M.M, Tamura, H, Akiba, H, Tsumoto, K. | 登録日 | 2019-01-25 | 公開日 | 2019-11-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Structural and thermodynamic basis for the recognition of the substrate-binding cleft on hen egg lysozyme by a single-domain antibody. Sci Rep, 9, 2019
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6JB9
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![BU of 6jb9 by Molmil](/molmil-images/mine/6jb9) | Crystal structure of nanobody D3-L11 (unbound form) | 分子名称: | Nanobody D3-L11, SULFATE ION | 著者 | Caaveiro, J.M.M, Tamura, H, Akiba, H, Tsumoto, K. | 登録日 | 2019-01-25 | 公開日 | 2019-11-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.15 Å) | 主引用文献 | Structural and thermodynamic basis for the recognition of the substrate-binding cleft on hen egg lysozyme by a single-domain antibody. Sci Rep, 9, 2019
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5Y78
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![BU of 5y78 by Molmil](/molmil-images/mine/5y78) | Crystal structure of the triose-phosphate/phosphate translocator in complex with inorganic phosphate | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, PHOSPHATE ION, Putative hexose phosphate translocator | 著者 | Lee, Y, Nishizawa, T, Takemoto, M, Kumazaki, K, Yamashita, K, Hirata, K, Minoda, A, Nagatoishi, S, Tsumoto, K, Ishitani, R, Nureki, O. | 登録日 | 2017-08-16 | 公開日 | 2017-10-04 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity Nat Plants, 3, 2017
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6JB8
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![BU of 6jb8 by Molmil](/molmil-images/mine/6jb8) | Crystal structure of nanobody D3-L11 in complex with hen egg-white lysozyme | 分子名称: | CHLORIDE ION, GLYCEROL, Lysozyme C, ... | 著者 | Caaveiro, J.M.M, Tamura, H, Akiba, H, Tsumoto, K. | 登録日 | 2019-01-25 | 公開日 | 2019-11-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Structural and thermodynamic basis for the recognition of the substrate-binding cleft on hen egg lysozyme by a single-domain antibody. Sci Rep, 9, 2019
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5Y79
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![BU of 5y79 by Molmil](/molmil-images/mine/5y79) | Crystal structure of the triose-phosphate/phosphate translocator in complex with 3-phosphoglycerate | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 3-PHOSPHOGLYCERIC ACID, CITRATE ANION, ... | 著者 | Lee, Y, Nishizawa, T, Takemoto, M, Kumazaki, K, Yamashita, K, Hirata, K, Minoda, A, Nagatoishi, S, Tsumoto, K, Ishitani, R, Nureki, O. | 登録日 | 2017-08-16 | 公開日 | 2017-10-04 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity Nat Plants, 3, 2017
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6JB5
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![BU of 6jb5 by Molmil](/molmil-images/mine/6jb5) | Crystal structure of nanobody D3-L11 mutant Y102A in complex with hen egg-white lysozyme (form II) | 分子名称: | CHLORIDE ION, GLYCEROL, Lysozyme C, ... | 著者 | Caaveiro, J.M.M, Tamura, H, Akiba, H, Tsumoto, K. | 登録日 | 2019-01-25 | 公開日 | 2019-11-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | Structural and thermodynamic basis for the recognition of the substrate-binding cleft on hen egg lysozyme by a single-domain antibody. Sci Rep, 9, 2019
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6LDX
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![BU of 6ldx by Molmil](/molmil-images/mine/6ldx) | |
6LDY
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![BU of 6ldy by Molmil](/molmil-images/mine/6ldy) | |
6LDW
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![BU of 6ldw by Molmil](/molmil-images/mine/6ldw) | |
6LDV
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![BU of 6ldv by Molmil](/molmil-images/mine/6ldv) | |
4P35
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![BU of 4p35 by Molmil](/molmil-images/mine/4p35) | Crystal structure of DJ-1 with Zinc(II) bound (crystal I) | 分子名称: | CHLORIDE ION, GLYCEROL, Protein DJ-1, ... | 著者 | Tashiro, S, Wu, C.-X, Hoang, Q.Q, Caaveiro, J.M.M, Tsumoto, K. | 登録日 | 2014-03-05 | 公開日 | 2014-04-09 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Thermodynamic and Structural Characterization of the Specific Binding of Zn(II) to Human Protein DJ-1. Biochemistry, 53, 2014
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4P2G
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![BU of 4p2g by Molmil](/molmil-images/mine/4p2g) | Crystal structure of DJ-1 in sulfinic acid form (aged crystal) | 分子名称: | 1,2-ETHANEDIOL, PENTAETHYLENE GLYCOL, Protein DJ-1 | 著者 | Tashiro, S, Wu, C.-X, Hoang, Q.Q, Caaveiro, J.M.M, Tsumoto, K. | 登録日 | 2014-03-04 | 公開日 | 2014-04-09 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | 主引用文献 | Thermodynamic and Structural Characterization of the Specific Binding of Zn(II) to Human Protein DJ-1. Biochemistry, 53, 2014
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4P36
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![BU of 4p36 by Molmil](/molmil-images/mine/4p36) | Crystal structure of DJ-1 With Zn(II) bound (crystal 2) | 分子名称: | 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL, Protein DJ-1, ZINC ION | 著者 | Tashiro, S, Wu, C.-X, Hoang, Q.Q, Caaveiro, J.M.M, Tsumoto, K. | 登録日 | 2014-03-05 | 公開日 | 2014-04-09 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.182 Å) | 主引用文献 | Thermodynamic and Structural Characterization of the Specific Binding of Zn(II) to Human Protein DJ-1. Biochemistry, 53, 2014
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4ZML
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![BU of 4zml by Molmil](/molmil-images/mine/4zml) | Crystal structure of human P-cadherin (ss-dimer) | 分子名称: | CALCIUM ION, CHLORIDE ION, Cadherin-3, ... | 著者 | Caaveiro, J.M.M, Kudo, S, Tsumoto, K. | 登録日 | 2015-05-04 | 公開日 | 2016-09-07 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Adhesive Dimerization of Human P-Cadherin Catalyzed by a Chaperone-like Mechanism Structure, 24, 2016
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4ZMV
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![BU of 4zmv by Molmil](/molmil-images/mine/4zmv) | Crystal structure of human P-cadherin (ss-X-dimer pocket I) | 分子名称: | CALCIUM ION, Cadherin-3, GLYCEROL, ... | 著者 | Caaveiro, J.M.M, Kudo, S, Tsumoto, K. | 登録日 | 2015-05-04 | 公開日 | 2016-09-07 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Adhesive Dimerization of Human P-Cadherin Catalyzed by a Chaperone-like Mechanism Structure, 24, 2016
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