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Solution structure of 53BP1 tandem Tudor domains in complex with a p53K370me2 peptide
分子名称:	Cellular tumor antigen p53, Tumor suppressor p53-binding protein 1
著者	Cui, G, Botuyan, M.V, Mer, G.
登録日	2014-11-15
公開日	2014-12-10
最終更新日	2015-03-18
実験手法	SOLUTION NMR
主引用文献	Structural Plasticity of Methyllysine Recognition by the Tandem Tudor Domain of 53BP1. Structure, 23, 2015

2MWP

Solution structure of 53BP1 tandem Tudor domains in complex with a p53K382me2 peptide
分子名称:	Cellular tumor antigen p53, Tumor suppressor p53-binding protein 1
著者	Cui, G, Botuyan, M.V, Mer, G.
登録日	2014-11-15
公開日	2014-12-10
最終更新日	2015-03-18
実験手法	SOLUTION NMR
主引用文献	Structural Plasticity of Methyllysine Recognition by the Tandem Tudor Domain of 53BP1. Structure, 23, 2015

2KDK

Structure of human circadian clock protein BMAL2 C-terminal PAS domain
分子名称:	Aryl hydrocarbon receptor nuclear translocator-like protein 2
著者	Wasielewski, E, Correia, C, Prendergast, F.G, Mer, G.
登録日	2009-01-10
公開日	2011-04-13
最終更新日	2024-05-22
実験手法	SOLUTION NMR
主引用文献	Structure of human circadian clock protein BMAL2 C-terminal PAS domain To be Published

2KRE

Solution structure of E4B/UFD2A U-Box domain
分子名称:	Ubiquitin conjugation factor E4 B
著者	Nomine, Y, Wasielewski, E, Botuyan, M, Mer, G.
登録日	2009-12-16
公開日	2009-12-29
最終更新日	2024-05-01
実験手法	SOLUTION NMR
主引用文献	Molecular Basis for the Association of Human E4B U Box Ubiquitin Ligase with E2-Conjugating Enzymes UbcH5c and Ubc4. Structure, 18, 2010

8U14

Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A lysine 15 in complex with RNF168-UbcH5c (class 2)
分子名称:	DNA (146-MER), DNA (147-MER), E3 ubiquitin-protein ligase RNF168, ...
著者	Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
登録日	2023-08-30
公開日	2024-01-17
最終更新日	2024-03-20
実験手法	ELECTRON MICROSCOPY (3.9 Å)
主引用文献	Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024

8U13

Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A lysine 15 in complex with RNF168-UbcH5c (class 1)
分子名称:	DNA (146-MER), DNA (147-MER), E3 ubiquitin-protein ligase RNF168, ...
著者	Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
登録日	2023-08-30
公開日	2024-01-17
最終更新日	2024-03-20
実験手法	ELECTRON MICROSCOPY (3.8 Å)
主引用文献	Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024

8TXV

Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 1)
分子名称:	DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
著者	Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
登録日	2023-08-24
公開日	2024-01-17
最終更新日	2024-03-20
実験手法	ELECTRON MICROSCOPY (3.8 Å)
主引用文献	Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024

8TXX

Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 3)
分子名称:	DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
著者	Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
登録日	2023-08-24
公開日	2024-01-17
最終更新日	2024-03-20
実験手法	ELECTRON MICROSCOPY (3.7 Å)
主引用文献	Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024

8UPF

Cryo-EM structure of the human nucleosome core particle in complex with RNF168-UbcH5c
分子名称:	DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
著者	Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
登録日	2023-10-22
公開日	2024-01-17
最終更新日	2024-03-20
実験手法	ELECTRON MICROSCOPY (3.2 Å)
主引用文献	Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024

8TXW

Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 2)
分子名称:	DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
著者	Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
登録日	2023-08-24
公開日	2024-01-17
最終更新日	2024-03-20
実験手法	ELECTRON MICROSCOPY (3.6 Å)
主引用文献	Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024

7KLZ

Structure of SPOP MATH domain in complex with a Geminin peptide
分子名称:	Geminin peptide, PHOSPHATE ION, Speckle-type POZ protein
著者	Cui, G, Botuyan, M.V, Mer, G.
登録日	2020-11-01
公開日	2021-08-18
最終更新日	2023-10-18
実験手法	X-RAY DIFFRACTION (3.4 Å)
主引用文献	SPOP mutation induces replication over-firing by impairing Geminin ubiquitination and triggers replication catastrophe upon ATR inhibition. Nat Commun, 12, 2021

3SD4

Crystal structure of the first Tudor domain of human PHF20
分子名称:	PHD finger protein 20
著者	Cui, G, Botuyan, M.V, Thompson, J.R, Mer, G.
登録日	2011-06-08
公開日	2011-06-22
最終更新日	2024-04-03
実験手法	X-RAY DIFFRACTION (1.928 Å)
主引用文献	PHF20 is an effector protein of p53 double lysine methylation that stabilizes and activates p53. Nat.Struct.Mol.Biol., 19, 2012

7LIN

X-ray structure of SPOP MATH domain (D140G) in complex with a 53BP1 peptide
分子名称:	SULFATE ION, Speckle-type POZ protein, TP53-binding protein 1 peptide
著者	Botuyan, M.V, Cui, G, Mer, G.
登録日	2021-01-27
公開日	2021-04-14
最終更新日	2023-10-18
実験手法	X-RAY DIFFRACTION (1.44 Å)
主引用文献	ATM-phosphorylated SPOP contributes to 53BP1 exclusion from chromatin during DNA replication. Sci Adv, 7, 2021

7LIO

X-ray structure of SPOP MATH domain (S119D) in complex with a 53BP1 peptide
分子名称:	Speckle-type POZ protein, TP53-binding protein 1 peptide
著者	Botuyan, M.V, Cui, G, Mer, G.
登録日	2021-01-27
公開日	2021-04-14
最終更新日	2023-10-18
実験手法	X-RAY DIFFRACTION (3.01 Å)
主引用文献	ATM-phosphorylated SPOP contributes to 53BP1 exclusion from chromatin during DNA replication. Sci Adv, 7, 2021

7LIQ

X-ray structure of SPOP MATH domain (S119A)
分子名称:	Speckle-type POZ protein
著者	Botuyan, M.V, Cui, G, Mer, G.
登録日	2021-01-27
公開日	2021-04-14
最終更新日	2023-10-18
実験手法	X-RAY DIFFRACTION (1.98 Å)
主引用文献	ATM-phosphorylated SPOP contributes to 53BP1 exclusion from chromatin during DNA replication. Sci Adv, 7, 2021

7LIP

X-ray structure of SPOP MATH domain (D140G)
分子名称:	SULFATE ION, Speckle-type POZ protein
著者	Botuyan, M.V, Cui, G, Mer, G.
登録日	2021-01-27
公開日	2021-04-14
最終更新日	2023-10-18
実験手法	X-RAY DIFFRACTION (1.48 Å)
主引用文献	ATM-phosphorylated SPOP contributes to 53BP1 exclusion from chromatin during DNA replication. Sci Adv, 7, 2021

7LXD

Structure of yeast DNA Polymerase Zeta (apo)
分子名称:	DNA polymerase delta small subunit, DNA polymerase delta subunit 3, DNA polymerase zeta catalytic subunit, ...
著者	Truong, C.D, Craig, T.A, Cui, G, Botuyan, M.V, Serkasevich, R.A, Chan, K.-Y, Mer, G, Chiu, P.-L, Kumar, R.
登録日	2021-03-03
公開日	2021-06-30
最終更新日	2024-03-06
実験手法	ELECTRON MICROSCOPY (4.11 Å)
主引用文献	Cryo-EM reveals conformational flexibility in apo DNA polymerase zeta. J.Biol.Chem., 297, 2021

8U4U

Crystal structure of 53BP1 tandem Tudor domain homodimer engineered with two disulfide bridges
分子名称:	TP53-binding protein 1
著者	Cui, G, Botuyan, M.V, Thompson, J.R, Mer, G.
登録日	2023-09-11
公開日	2023-09-20
最終更新日	2023-10-11
実験手法	X-RAY DIFFRACTION (3.79 Å)
主引用文献	An autoinhibited state of 53BP1 revealed by small molecule antagonists and protein engineering. Nat Commun, 14, 2023

3TW1

Structure of Rtt106-AHN
分子名称:	GLYCEROL, Histone chaperone RTT106, N-[2-(1H-IMIDAZOL-4-YL)ETHYL]ACETAMIDE
著者	Su, D, Thompson, J.R, Mer, G.
登録日	2011-09-21
公開日	2012-02-01
最終更新日	2023-12-06
実験手法	X-RAY DIFFRACTION (1.772 Å)
主引用文献	Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106. Nature, 483, 2012

3TVV

Structure of the tandem PH domains of Rtt106 (residues 68-315)
分子名称:	Histone chaperone RTT106
著者	Su, D, Thompson, J.R, Mer, G.
登録日	2011-09-20
公開日	2012-02-01
最終更新日	2023-12-06
実験手法	X-RAY DIFFRACTION (2.589 Å)
主引用文献	Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106. Nature, 483, 2012

2QQR

JMJD2A hybrid tudor domains
分子名称:	JmjC domain-containing histone demethylation protein 3A, SULFATE ION
著者	Lee, J, Botuyan, M.V, Mer, G.
登録日	2007-07-26
公開日	2007-12-11
最終更新日	2023-11-15
実験手法	X-RAY DIFFRACTION (1.8 Å)
主引用文献	Distinct binding modes specify the recognition of methylated histones H3K4 and H4K20 by JMJD2A-tudor. Nat.Struct.Mol.Biol., 15, 2008

8UQE

Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 26-residue linker (RING not modeled in density)
分子名称:	E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E
著者	Hu, Q, Botuyan, M.V, Mer, G.
登録日	2023-10-23
公開日	2024-01-17
最終更新日	2024-03-20
実験手法	X-RAY DIFFRACTION (3.562 Å)
主引用文献	Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024

8UQB

Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 20-residue linker (crystallization condition 1)
分子名称:	CHLORIDE ION, E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E, ZINC ION
著者	Hu, Q, Botuyan, M.V, Mer, G.
登録日	2023-10-23
公開日	2024-01-17
最終更新日	2024-03-20
実験手法	X-RAY DIFFRACTION (2.484 Å)
主引用文献	Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024

8UQA

Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 12-residue linker
分子名称:	CHLORIDE ION, E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E, SODIUM ION, ...
著者	Hu, Q, Botuyan, M.V, Mer, G.
登録日	2023-10-23
公開日	2024-01-17
最終更新日	2024-03-20
実験手法	X-RAY DIFFRACTION (2.049 Å)
主引用文献	Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024

8UQ9

Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 4-residue linker
分子名称:	CHLORIDE ION, E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E, GLYCEROL, ...
著者	Hu, Q, Botuyan, M.V, Mer, G.
登録日	2023-10-23
公開日	2024-01-17
最終更新日	2024-03-20
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024

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