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7WBM
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BU of 7wbm by Molmil
Crystal structure of Legionella pneumophila effector protein Lpg0081
分子名称: Lpg0081, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
著者Lee, J, Kim, H, Oh, B.H.
登録日2021-12-17
公開日2022-06-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Reversible modification of mitochondrial ADP/ATP translocases by paired Legionella effector proteins.
Proc.Natl.Acad.Sci.USA, 119, 2022
7UYG
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BU of 7uyg by Molmil
Structure of the first OTU domain from Legionella pneumophila effector protein LotA
分子名称: GLYCEROL, IODIDE ION, LotA
著者Pruneda, J.N.
登録日2022-05-06
公開日2022-12-21
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Mechanism of Lys6 poly-ubiquitin specificity by the L. pneumophila deubiquitinase LotA.
Mol.Cell, 83, 2023
7UYH
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BU of 7uyh by Molmil
Structure of the first OTU domain from Legionella pneumophila effector protein LotA bound to K6-linked diUb
分子名称: LotA, Ubiquitin
著者Warren, G.D, Pruneda, J.N.
登録日2022-05-06
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Mechanism of Lys6 poly-ubiquitin specificity by the L. pneumophila deubiquitinase LotA.
Mol.Cell, 83, 2023
5X1V
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BU of 5x1v by Molmil
PKM2 in complex with compound 2
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, 4-[2,3-bis(chloranyl)phenyl]carbonyl-1-methyl-pyrrole-2-carboxamide, Pyruvate kinase PKM
著者Matsui, Y, Hanzawa, H.
登録日2017-01-27
公開日2017-05-31
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Discovery and structure-guided fragment-linking of 4-(2,3-dichlorobenzoyl)-1-methyl-pyrrole-2-carboxamide as a pyruvate kinase M2 activator
Bioorg. Med. Chem., 25, 2017
5X1W
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BU of 5x1w by Molmil
PKM2 in complex with compound 5
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, 4-[2,3-bis(chloranyl)phenyl]carbonyl-N-[2-[[4-[2,3-bis(chloranyl)phenyl]carbonyl-1-methyl-pyrrol-2-yl]carbonylamino]ethyl]-1-methyl-pyrrole-2-carboxamide, Pyruvate kinase PKM
著者Matsui, Y, Hanzawa, H.
登録日2017-01-27
公開日2017-05-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Discovery and structure-guided fragment-linking of 4-(2,3-dichlorobenzoyl)-1-methyl-pyrrole-2-carboxamide as a pyruvate kinase M2 activator
Bioorg. Med. Chem., 25, 2017
2RLT
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BU of 2rlt by Molmil
phosphorylated CPI-17 (22-120)
分子名称: Protein phosphatase 1 regulatory subunit 14A
著者Eto, M.
登録日2007-08-11
公開日2008-07-15
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Phosphorylation-induced conformational switching of CPI-17 produces a potent myosin phosphatase inhibitor.
Structure, 15, 2007
2ZZU
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BU of 2zzu by Molmil
Human Factor VIIA-Tissue Factor Complexed with ethylsulfonamide-D-5-(3-carboxybenzyloxy)-Trp-Gln-p-aminobenzamidine
分子名称: 3-[[3-[(2R)-3-[[(2S)-5-amino-1-[(4-carbamimidoylphenyl)methylamino]-1,5-dioxo-pentan-2-yl]amino]-2-(ethylsulfonylamino)-3-oxo-propyl]-1H-indol-5-yl]oxymethyl]benzoic acid, CALCIUM ION, Factor VII heavy chain, ...
著者Kadono, S, Sakamoto, A, Kikuchi, Y, Oh-Eda, M, Yabuta, N, Koga, T, Hattori, K, Shiraishi, T, Haramura, M, Sato, H, Ohta, M, Kozono, T.
登録日2009-02-25
公開日2009-03-24
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Design and synthesis of peptidomimetic factor VIIa inhibitors
Chem.Pharm.Bull., 58, 2010
3A71
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High resolution structure of Penicillium chrysogenum alpha-L-arabinanase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Exo-arabinanase
著者Sogabe, Y.
登録日2009-09-11
公開日2010-09-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.14 Å)
主引用文献High-resolution structure of exo-arabinanase from Penicillium chrysogenum
Acta Crystallogr.,Sect.D, 67, 2011
3A72
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High resolution structure of Penicillium chrysogenum alpha-L-arabinanase complexed with arabinobiose
分子名称: Exo-arabinanase, alpha-L-arabinofuranose-(1-5)-alpha-L-arabinofuranose
著者Sogabe, Y.
登録日2009-09-11
公開日2010-09-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献High-resolution structure of exo-arabinanase from Penicillium chrysogenum
Acta Crystallogr.,Sect.D, 67, 2011
3P1Z
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BU of 3p1z by Molmil
Crystal structure of the Aperopyrum pernix RNA splicing endonuclease
分子名称: Putative uncharacterized protein, tRNA-splicing endonuclease
著者Hirata, A.
登録日2010-10-01
公開日2011-08-10
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop
Nucleic Acids Res., 39, 2011
8H4V
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BU of 8h4v by Molmil
Mincle CRD complex with PGL trisaccharide
分子名称: (2~{R},3~{R},4~{S},5~{S},6~{R})-6-(methoxymethyl)oxane-2,3,4,5-tetrol-(1-4)-6-deoxy-2,3-di-O-methyl-alpha-L-mannopyranose-(1-2)-3-O-methyl-alpha-L-rhamnopyranose, C-type lectin domain family 4 member E, CALCIUM ION
著者Ishizuka, S, Nagae, M, Yamasaki, S.
登録日2022-10-11
公開日2023-08-09
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献PGL-III, a Rare Intermediate of Mycobacterium leprae Phenolic Glycolipid Biosynthesis, Is a Potent Mincle Ligand.
Acs Cent.Sci., 9, 2023
8HB5
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BU of 8hb5 by Molmil
Crystal structure of Mincle in complex with HD-275
分子名称: (2~{R},3~{R},4~{S},5~{S},6~{R})-6-(methoxymethyl)oxane-2,3,4,5-tetrol, C-type lectin domain family 4 member E, CALCIUM ION
著者Ishizuka, S, Nagae, M, Yamasaki, S.
登録日2022-10-27
公開日2023-08-09
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献PGL-III, a Rare Intermediate of Mycobacterium leprae Phenolic Glycolipid Biosynthesis, Is a Potent Mincle Ligand.
Acs Cent.Sci., 9, 2023
1MG8
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BU of 1mg8 by Molmil
NMR structure of ubiquitin-like domain in murine Parkin
分子名称: Parkin
著者Tashiro, M, Okubo, S, Shimotakahara, S, Hatanaka, H, Yasuda, H, Kainosho, M, Yokoyama, S, Shindo, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-08-15
公開日2003-04-08
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献NMR structure of ubiquitin-like domain in PARKIN: Gene product of familial Parkinson's disease.
J.Biomol.NMR, 25, 2003
2BJ8
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BU of 2bj8 by Molmil
NIKR IN CLOSED CONFORMATION AND NICKEL BOUND TO HIGH and LOW-AFFINITY SITES
分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ...
著者Tahirov, T.H.
登録日2005-01-31
公開日2005-04-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of Pyrococcus Horikoshii Nikr: Nickel Sensing and Implications for the Regulation of DNA Recognition
J.Mol.Biol., 348, 2005
2BJ9
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NIKR with bound NICKEL and phosphate
分子名称: NICKEL (II) ION, NICKEL RESPONSIVE REGULATOR, PHOSPHATE ION, ...
著者Tahirov, T.H, Chivers, P.T.
登録日2005-01-31
公開日2005-04-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of Pyrococcus Horikoshii Nikr: Nickel Sensing and Implications for the Regulation of DNA Recognition
J.Mol.Biol., 348, 2005
2BJ7
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NIKR IN CLOSED CONFORMATION AND NICKEL BOUND TO HIGH-AFFINITY SITES
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, NICKEL (II) ION, ...
著者Tahirov, T.H.
登録日2005-01-31
公開日2005-04-08
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of Pyrococcus Horikoshii Nikr: Nickel Sensing and Implications for the Regulation of DNA Recognition
J.Mol.Biol., 348, 2005
2BJ3
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BU of 2bj3 by Molmil
NIKR-apo
分子名称: CHLORIDE ION, MAGNESIUM ION, NICKEL RESPONSIVE REGULATOR
著者Tahirov, T.H.
登録日2005-01-28
公開日2005-04-08
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of Pyrococcus Horikoshii Nikr: Nickel Sensing and Implications for the Regulation of DNA Recognition
J.Mol.Biol., 348, 2005
2BJ1
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NIKR IN OPEN CONFORMATION AND NICKEL BOUND TO HIGH-AFFINITY SITES
分子名称: CHLORIDE ION, NICKEL (II) ION, NICKEL RESPONSIVE REGULATOR
著者Tahirov, T.H.
登録日2005-01-27
公開日2005-04-08
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of Pyrococcus Horikoshii Nikr: Nickel Sensing and Implications for the Regulation of DNA Recognition
J.Mol.Biol., 348, 2005
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