Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2N8M
DownloadVisualize
BU of 2n8m by Molmil
Zipcode-binding-protein-1 KH3(DD)KH4 domains in complex with the KH4 RNA target
分子名称: Insulin-like growth factor 2 mRNA-binding protein 1, RNA (5'-R(P*UP*CP*GP*GP*AP*CP*U)-3')
著者Nicastro, G, Ramos, A, Candel, A, Hollingworth, D.
登録日2015-10-21
公開日2017-01-25
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Zipcode-binding-protein-1 KH3(DD)KH4 domains in complex with the RNA target UCGGACU
To be Published
5JZD
DownloadVisualize
BU of 5jzd by Molmil
A re-refinement of the isochorismate synthase EntC
分子名称: (5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid, Isochorismate synthase EntC, MAGNESIUM ION
著者Meneely, K.M, Lamb, A.L.
登録日2016-05-16
公開日2016-07-20
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.303 Å)
主引用文献An Open and Shut Case: The Interaction of Magnesium with MST Enzymes.
J.Am.Chem.Soc., 138, 2016
5JWI
DownloadVisualize
BU of 5jwi by Molmil
Crystal structure of Porphyromonas endodontalis DPP11 in complex with dipeptide Arg-Glu
分子名称: ARGININE, Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION, ...
著者Bezerra, G.A, Fedosyuk, S, Ohara-Nemoto, Y, Nemoto, T.K, Djinovic-Carugo, K.
登録日2016-05-12
公開日2017-06-14
最終更新日2017-06-21
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Bacterial protease uses distinct thermodynamic signatures for substrate recognition.
Sci Rep, 7, 2017
2NBH
DownloadVisualize
BU of 2nbh by Molmil
Solution structure of the HYD1 hydrophobin from Schizophyllum commune
分子名称: Fungal hydrophobin
著者Langelaan, D, Smith, S, Grondin, J.
登録日2016-02-21
公開日2016-03-16
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Characterization of a Basidiomycota hydrophobin reveals the structural basis for a high-similarity Class I subdivision.
Sci Rep, 7, 2017
5KDL
DownloadVisualize
BU of 5kdl by Molmil
Crystal structure of the 4 alanine insertion variant of the Gi alpha1 subunit bound to GTPgammaS
分子名称: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, Guanine nucleotide-binding protein G(i) subunit alpha-1, MAGNESIUM ION
著者Kaya, A.I, Lokits, A.D, Gilbert, J, Iverson, T.M, Meiler, J, Hamm, H.E.
登録日2016-06-08
公開日2016-08-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.665 Å)
主引用文献A Conserved Hydrophobic Core in G alpha i1 Regulates G Protein Activation and Release from Activated Receptor.
J.Biol.Chem., 291, 2016
5KD4
DownloadVisualize
BU of 5kd4 by Molmil
Crystal Structure of Murine MHC-I H-2Dd in complex with Murine Beta2-Microglobulin and a Variant of Peptide (PVI10) of HIV gp120 MN Isolate (IGPGRAFYVI)
分子名称: Beta-2-microglobulin, H-2 class I histocompatibility antigen, D-D alpha chain, ...
著者Jiang, J, Natarajan, K, Margulies, D.
登録日2016-06-07
公開日2017-10-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Effects of Cross-Presentation, Antigen Processing, and Peptide Binding in HIV Evasion of T Cell Immunity.
J. Immunol., 200, 2018
5KH4
DownloadVisualize
BU of 5kh4 by Molmil
Crystal Structure of Steptococcus pneumoniae Undecaprenyl pyrophosphate Synthase (UPPS) with FARNESYL DIPHOSPHATE
分子名称: FARNESYL DIPHOSPHATE, Isoprenyl transferase
著者Concha, N.O.
登録日2016-06-14
公開日2016-07-20
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Discovery and Characterization of a Class of Pyrazole Inhibitors of Bacterial Undecaprenyl Pyrophosphate Synthase.
J.Med.Chem., 59, 2016
5KHN
DownloadVisualize
BU of 5khn by Molmil
Crystal structures of the Burkholderia multivorans hopanoid transporter HpnN
分子名称: RND transporter
著者Su, C.-C, Yu, E.W.
登録日2016-06-15
公開日2017-06-14
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.445 Å)
主引用文献Crystal structures of the Burkholderia multivorans hopanoid transporter HpnN.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5KH2
DownloadVisualize
BU of 5kh2 by Molmil
Crystal Structure of Steptococcus pneumoniae Undecaprenyl pyrophosphate Synthase (UPPS)
分子名称: Isoprenyl transferase
著者Concha, N.O.
登録日2016-06-14
公開日2016-07-20
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Discovery and Characterization of a Class of Pyrazole Inhibitors of Bacterial Undecaprenyl Pyrophosphate Synthase.
J.Med.Chem., 59, 2016
1L01
DownloadVisualize
BU of 1l01 by Molmil
STRUCTURAL STUDIES OF MUTANTS OF THE LYSOZYME OF BACTERIOPHAGE T4. THE TEMPERATURE-SENSITIVE MUTANT PROTEIN THR157 (RIGHT ARROW) ILE
分子名称: T4 LYSOZYME
著者Dao-Pin, S, Alber, T, Matthews, B.W.
登録日1988-02-05
公開日1988-04-16
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural studies of mutants of the lysozyme of bacteriophage T4. The temperature-sensitive mutant protein Thr157----Ile.
J.Mol.Biol., 197, 1987
5KJK
DownloadVisualize
BU of 5kjk by Molmil
SMYD2 in complex with AZ370
分子名称: (R,R)-2,3-BUTANEDIOL, 2-[2-[1-[2-(3,4-dichlorophenyl)ethyl]azetidin-3-yl]oxyphenyl]-~{N}-(3-pyrrolidin-1-ylpropyl)pyridine-4-carboxamide, N-lysine methyltransferase SMYD2, ...
著者Ferguson, A.
登録日2016-06-20
公開日2016-12-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Design, Synthesis, and Biological Activity of Substrate Competitive SMYD2 Inhibitors.
J. Med. Chem., 59, 2016
5KJL
DownloadVisualize
BU of 5kjl by Molmil
SMYD2 in complex with AZ378
分子名称: N-lysine methyltransferase SMYD2, S-ADENOSYLMETHIONINE, ZINC ION
著者Ferguson, A.
登録日2016-06-20
公開日2016-12-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Design, Synthesis, and Biological Activity of Substrate Competitive SMYD2 Inhibitors.
J. Med. Chem., 59, 2016
5JH6
DownloadVisualize
BU of 5jh6 by Molmil
Crystal structure of TL10-92 bound to TAK1-TAB1
分子名称: 2-[(5-chloro-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)amino]phenyl prop-2-enoate, Mitogen-activated protein kinase kinase kinase 7,TGF-beta-activated kinase 1 and MAP3K7-binding protein 1
著者Gurbani, D, Westover, K.D.
登録日2016-04-20
公開日2017-02-15
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.365 Å)
主引用文献Structure-guided development of covalent TAK1 inhibitors.
Bioorg. Med. Chem., 25, 2017
5JM9
DownloadVisualize
BU of 5jm9 by Molmil
Structure of S. cerevesiae mApe1 dodecamer
分子名称: Vacuolar aminopeptidase 1
著者Sachse, C, Bertipaglia, C.
登録日2016-04-28
公開日2016-06-15
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (24 Å)
主引用文献Higher-order assemblies of oligomeric cargo receptor complexes form the membrane scaffold of the Cvt vesicle.
Embo Rep., 17, 2016
5JIG
DownloadVisualize
BU of 5jig by Molmil
Crytsal structure of Wss1 from S. pombe
分子名称: NICKEL (II) ION, OXYGEN MOLECULE, Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c
著者Groll, M, Stingele, J, Boulton, S.
登録日2016-04-22
公開日2016-11-09
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Mechanism and Regulation of DNA-Protein Crosslink Repair by the DNA-Dependent Metalloprotease SPRTN.
Mol.Cell, 64, 2016
5J3D
DownloadVisualize
BU of 5j3d by Molmil
Crystal structure of human Fab 14N4 in complex with post-fusion RSV F
分子名称: 14N4 heavy chain, 14N4 light chain, Fusion glycoprotein F0
著者Mousa, J.J, Crowe, J.E.
登録日2016-03-30
公開日2016-10-26
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (4.077 Å)
主引用文献Structural basis for nonneutralizing antibody competition at antigenic site II of the respiratory syncytial virus fusion protein.
Proc.Natl.Acad.Sci.USA, 113, 2016
5J41
DownloadVisualize
BU of 5j41 by Molmil
Glutathione S-transferase bound with hydrolyzed Piperlongumine
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-(3,4,5-trimethoxyphenyl)propanoic acid, GLUTATHIONE, ...
著者Harshbarger, W, Gondi, S, Ficarro, S, Hunter, J, Udayakumar, D, Gurbani, D, Marto, J, Westover, K.
登録日2016-03-31
公開日2016-11-30
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.19035351 Å)
主引用文献Structural and Biochemical Analyses Reveal the Mechanism of Glutathione S-Transferase Pi 1 Inhibition by the Anti-cancer Compound Piperlongumine.
J. Biol. Chem., 292, 2017
5IWJ
DownloadVisualize
BU of 5iwj by Molmil
LAmbda-[Ru(TAP)2(dppz)]2+ bound to d(CCGGGCCCGG
分子名称: BARIUM ION, DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3'), Ru(tap)2(dppz) complex
著者Souter, J.E, Hall, J.P, Cardin, C.J.
登録日2016-03-22
公開日2017-04-05
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献The binding specificity of RuTAP2dppz
To Be Published
5IXA
DownloadVisualize
BU of 5ixa by Molmil
HCMV DNA polymerase processivity subunit UL44 at neutral pH and low salt
分子名称: DNA polymerase processivity factor
著者Chen, H, Coen, D.M, Hogle, J.M, Filman, D.J.
登録日2016-03-23
公開日2016-11-30
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.684 Å)
主引用文献A Small Covalent Allosteric Inhibitor of Human Cytomegalovirus DNA Polymerase Subunit Interactions.
ACS Infect Dis, 3, 2017
5KQ5
DownloadVisualize
BU of 5kq5 by Molmil
AMPK bound to allosteric activator
分子名称: 5'-AMP-activated protein kinase catalytic subunit alpha-1, 5'-AMP-activated protein kinase subunit beta-1, 5'-AMP-activated protein kinase subunit gamma-1, ...
著者Calabrese, M.F, Kurumbail, R.G.
登録日2016-07-05
公開日2016-08-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.41 Å)
主引用文献Discovery and Preclinical Characterization of 6-Chloro-5-[4-(1-hydroxycyclobutyl)phenyl]-1H-indole-3-carboxylic Acid (PF-06409577), a Direct Activator of Adenosine Monophosphate-activated Protein Kinase (AMPK), for the Potential Treatment of Diabetic Nephropathy.
J.Med.Chem., 59, 2016
5KSJ
DownloadVisualize
BU of 5ksj by Molmil
Crystal structure of deoxygenated hemoglobin in complex with Sphingosine phosphate
分子名称: (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
著者Ahmed, M.H, Safo, M.K, Xia, Y.
登録日2016-07-08
公開日2017-07-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural and Functional Insight of Sphingosine 1-Phosphate-Mediated Pathogenic Metabolic Reprogramming in Sickle Cell Disease.
Sci Rep, 7, 2017
5IKN
DownloadVisualize
BU of 5ikn by Molmil
Crystal Structure of the T7 Replisome in the Absence of DNA
分子名称: DNA primase/helicase, DNA-directed DNA polymerase, Thioredoxin-1
著者Wallen, J.R, Ellenberger, T.
登録日2016-03-03
公開日2016-12-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (4.802 Å)
主引用文献Hybrid Methods Reveal Multiple Flexibly Linked DNA Polymerases within the Bacteriophage T7 Replisome.
Structure, 25, 2017
2PEE
DownloadVisualize
BU of 2pee by Molmil
Crystal Structure of a Thermophilic Serpin, Tengpin, in the Native State
分子名称: GLYCEROL, SULFATE ION, Serine protease inhibitor
著者Zhang, Q.W, Buckle, A.M, Whisstock, J.C.
登録日2007-04-02
公開日2007-06-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The N terminus of the serpin, tengpin, functions to trap the metastable native state.
Embo Rep., 8, 2007
5JK3
DownloadVisualize
BU of 5jk3 by Molmil
Crystal structure of TL11-128 bound to TAK1-TAB1
分子名称: Mitogen-activated protein kinase kinase kinase 7,TGF-beta-activated kinase 1 and MAP3K7-binding protein 1, ~{N}-[2-[5-chloranyl-2-[(1-methylpyrazol-4-yl)amino]pyrimidin-4-yl]oxyphenyl]prop-2-enamide
著者Gurbani, D, Westover, K.D.
登録日2016-04-25
公開日2017-02-15
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.371 Å)
主引用文献Structure-guided development of covalent TAK1 inhibitors.
Bioorg. Med. Chem., 25, 2017
5IZP
DownloadVisualize
BU of 5izp by Molmil
Solution Structure of DNA Dodecamer with 8-oxoguanine at 10th Position
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3')
著者Gruber, D.R, Hoppins, J.J, Miears, H.L, Kiryutin, A.S, Kasymov, R.D, Yurkovskaya, A.V, Zharkov, D.O, Smirnov, S.L.
登録日2016-03-25
公開日2016-08-03
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献8-Oxoguanine Affects DNA Backbone Conformation in the EcoRI Recognition Site and Inhibits Its Cleavage by the Enzyme.
Plos One, 11, 2016

225399

件を2024-09-25に公開中

PDB statisticsPDBj update infoContact PDBjnumon