3AVY
 
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3AGP
 | | Structure of viral polymerase form I | | 分子名称: | CALCIUM ION, Elongation factor Ts, Elongation factor Tu, ... | | 著者 | Takeshita, D, Tomita, K. | | 登録日 | 2010-04-06 | | 公開日 | 2010-09-01 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Assembly of Q{beta} viral RNA polymerase with host translational elongation factors EF-Tu and -Ts
Proc.Natl.Acad.Sci.USA, 107, 2010
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3AGQ
 | | Structure of viral polymerase form II | | 分子名称: | Elongation factor Ts, Elongation factor Tu 1, LINKER, ... | | 著者 | Takeshita, D, Tomita, K. | | 登録日 | 2010-04-06 | | 公開日 | 2010-09-01 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (3.22 Å) | | 主引用文献 | Assembly of Q{beta} viral RNA polymerase with host translational elongation factors EF-Tu and -Ts
Proc.Natl.Acad.Sci.USA, 107, 2010
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2EB1
 | | Crystal Structure of the C-Terminal RNase III Domain of Human Dicer | | 分子名称: | Endoribonuclease Dicer, MAGNESIUM ION | | 著者 | Takeshita, D, Zenno, S, Lee, W.C, Nagata, K, Saigo, K, Tanokura, M. | | 登録日 | 2007-02-05 | | 公開日 | 2007-11-06 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Homodimeric Structure and Double-stranded RNA Cleavage Activity of the C-terminal RNase III Domain of Human Dicer
J.Mol.Biol., 374, 2007
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2DOK
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3D2M
 | | Crystal structure of N-acetylglutamate synthase from Neisseria gonorrhoeae complexed with coenzyme A and L-glutamate | | 分子名称: | COENZYME A, GLUTAMIC ACID, Putative acetylglutamate synthase | | 著者 | Shi, D, Min, L, Jin, Z, Allewell, N.M, Tuchman, M. | | 登録日 | 2008-05-08 | | 公開日 | 2008-12-23 | | 最終更新日 | 2023-08-30 | | 実験手法 | X-RAY DIFFRACTION (2.21 Å) | | 主引用文献 | Mechanism of Allosteric Inhibition of N-Acetyl-L-glutamate Synthase by L-Arginine.
J.Biol.Chem., 284, 2009
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3D2P
 | | Crystal structure of N-acetylglutamate synthase from Neisseria gonorrhoeae complexed with coenzyme A and L-arginine | | 分子名称: | ARGININE, COENZYME A, Putative acetylglutamate synthase | | 著者 | Shi, D, Min, L, Jin, Z, Allewell, N.M, Tuchman, M. | | 登録日 | 2008-05-08 | | 公開日 | 2008-12-23 | | 最終更新日 | 2023-08-30 | | 実験手法 | X-RAY DIFFRACTION (2.56 Å) | | 主引用文献 | Mechanism of Allosteric Inhibition of N-Acetyl-L-glutamate Synthase by L-Arginine.
J.Biol.Chem., 284, 2009
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4IWY
 | | SeMet-substituted RimK structure | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, GLUTAMIC ACID, Ribosomal protein S6 modification protein, ... | | 著者 | Shi, D, Zhao, G, Jin, Z, Allewell, N.M, Tuchman, M. | | 登録日 | 2013-01-24 | | 公開日 | 2013-05-08 | | 最終更新日 | 2018-01-24 | | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | | 主引用文献 | Structure and function of Escherichia coli RimK, an ATP-grasp fold, l-glutamyl ligase enzyme.
Proteins, 81, 2013
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4IWX
 | | Rimk structure at 2.85A | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, GLUTAMIC ACID, Ribosomal protein S6 modification protein, ... | | 著者 | Shi, D, Zhao, G, Jin, Z, Allewell, N.M, Tuchman, M. | | 登録日 | 2013-01-24 | | 公開日 | 2013-05-08 | | 最終更新日 | 2023-09-20 | | 実験手法 | X-RAY DIFFRACTION (2.854 Å) | | 主引用文献 | Structure and function of Escherichia coli RimK, an ATP-grasp fold, l-glutamyl ligase enzyme.
Proteins, 81, 2013
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4K30
 | | Structure of the N-acetyltransferase domain of human N-acetylglutamate synthase | | 分子名称: | N-ACETYL-L-GLUTAMATE, N-acetylglutamate synthase, mitochondrial | | 著者 | Shi, D, Zhao, G, Jin, Z, Allewell, N.M, Tuchman, M. | | 登録日 | 2013-04-10 | | 公開日 | 2013-08-14 | | 最終更新日 | 2023-09-20 | | 実験手法 | X-RAY DIFFRACTION (2.103 Å) | | 主引用文献 | Crystal structure of the N-acetyltransferase domain of human N-acetyl-L-glutamate synthase in complex with N-acetyl-L-glutamate provides insights into its catalytic and regulatory mechanisms.
Plos One, 8, 2013
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4I49
 | | Structure of ngNAGS bound with bisubstrate analog CoA-NAG | | 分子名称: | (2S)-2-({(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14,20-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaicosan-20-yl}amino)pentanedioic acid (non-preferred name), Amino-acid acetyltransferase, SULFATE ION | | 著者 | Shi, D, Zhao, G, Allewell, N.M, Tuchman, M. | | 登録日 | 2012-11-27 | | 公開日 | 2013-01-09 | | 最終更新日 | 2023-09-20 | | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | | 主引用文献 | Structure of the complex of Neisseria gonorrhoeae N-acetyl-l-glutamate synthase with a bound bisubstrate analog.
Biochem.Biophys.Res.Commun., 430, 2013
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6KBR
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5ZU2
 | | Effect of mutation (R554A) on FAD modification in Aspergillus oryzae RIB40formate oxidase | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, ... | | 著者 | Mikami, B, Uchida, H, Doubayashi, D. | | 登録日 | 2018-05-06 | | 公開日 | 2019-05-22 | | 最終更新日 | 2024-03-27 | | 実験手法 | X-RAY DIFFRACTION (2.441 Å) | | 主引用文献 | The microenvironment surrounding FAD mediates its conversion to 8-formyl-FAD in Aspergillus oryzae RIB40 formate oxidase.
J.Biochem., 166, 2019
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5ZU3
 | | Effect of mutation (R554K) on FAD modification in Aspergillus oryzae RIB40formate oxidase | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Formate oxidase, ... | | 著者 | Mikami, B, Uchida, H, Doubayashi, D. | | 登録日 | 2018-05-06 | | 公開日 | 2019-05-22 | | 最終更新日 | 2024-03-27 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | The microenvironment surrounding FAD mediates its conversion to 8-formyl-FAD in Aspergillus oryzae RIB40 formate oxidase.
J.Biochem., 166, 2019
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4ZNN
 | | MicroED structure of the segment, GVVHGVTTVA, from the A53T familial mutant of Parkinson's disease protein, alpha-synuclein residues 47-56 | | 分子名称: | Alpha-synuclein | | 著者 | Rodriguez, J.A, Ivanova, M, Sawaya, M.R, Cascio, D, Reyes, F, Shi, D, Johnson, L, Guenther, E, Sangwan, S, Hattne, J, Nannenga, B, Brewster, A.S, Messerschmidt, M, Boutet, S, Sauter, N.K, Gonen, T, Eisenberg, D.S. | | 登録日 | 2015-05-05 | | 公開日 | 2015-09-09 | | 最終更新日 | 2024-03-06 | | 実験手法 | ELECTRON CRYSTALLOGRAPHY (1.41 Å) | | 主引用文献 | Structure of the toxic core of alpha-synuclein from invisible crystals.
Nature, 525, 2015
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1MFR
 | | CRYSTAL STRUCTURE OF M FERRITIN | | 分子名称: | M FERRITIN, MAGNESIUM ION | | 著者 | Ha, Y, Shi, D, Allewell, N.M. | | 登録日 | 1998-06-18 | | 公開日 | 1999-06-22 | | 最終更新日 | 2024-05-22 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Crystal structure of bullfrog M ferritin at 2.8 A resolution: analysis of subunit interactions and the binuclear metal center
J.Biol.Inorg.Chem., 4, 1999
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3M4J
 | | Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with PALAO | | 分子名称: | N-acetylornithine carbamoyltransferase, N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine, SULFATE ION | | 著者 | Li, Y, Yu, X, Allewell, N.M, Tuchman, M, Shi, D. | | 登録日 | 2010-03-11 | | 公開日 | 2010-07-28 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Reversible Post-Translational Carboxylation Modulates the Enzymatic Activity of N-Acetyl-l-ornithine Transcarbamylase.
Biochemistry, 49, 2010
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5A3E
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5I9S
 | | MicroED structure of proteinase K at 1.75 A resolution | | 分子名称: | Proteinase K, SULFATE ION | | 著者 | Hattne, J, Shi, D, de la Cruz, M.J, Reyes, F.E, Gonen, T. | | 登録日 | 2016-02-20 | | 公開日 | 2016-06-08 | | 最終更新日 | 2023-08-30 | | 実験手法 | ELECTRON CRYSTALLOGRAPHY (1.75 Å) | | 主引用文献 | Modeling truncated pixel values of faint reflections in MicroED images.
J.Appl.Crystallogr., 49, 2016
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5K7P
 | | MicroED structure of xylanase at 2.3 A resolution | | 分子名称: | Endo-1,4-beta-xylanase 2, IODIDE ION | | 著者 | de la Cruz, M.J, Hattne, J, Shi, D, Seidler, P, Rodriguez, J, Reyes, F.E, Sawaya, M.R, Cascio, D, Eisenberg, D, Gonen, T. | | 登録日 | 2016-05-26 | | 公開日 | 2017-04-05 | | 最終更新日 | 2024-02-28 | | 実験手法 | ELECTRON CRYSTALLOGRAPHY (2.3 Å) | | 主引用文献 | Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.
Nat. Methods, 14, 2017
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5K7R
 | | MicroED structure of trypsin at 1.7 A resolution | | 分子名称: | CALCIUM ION, Cationic trypsin | | 著者 | de la Cruz, M.J, Hattne, J, Shi, D, Seidler, P, Rodriguez, J, Reyes, F.E, Sawaya, M.R, Cascio, D, Eisenberg, D, Gonen, T. | | 登録日 | 2016-05-26 | | 公開日 | 2017-04-05 | | 最終更新日 | 2018-08-22 | | 実験手法 | ELECTRON CRYSTALLOGRAPHY (1.7 Å) | | 主引用文献 | Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.
Nat. Methods, 14, 2017
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5K7Q
 | | MicroED structure of thaumatin at 2.5 A resolution | | 分子名称: | Thaumatin-1 | | 著者 | de la Cruz, M.J, Hattne, J, Shi, D, Seidler, P, Rodriguez, J, Reyes, F.E, Sawaya, M.R, Cascio, D, Eisenberg, D, Gonen, T. | | 登録日 | 2016-05-26 | | 公開日 | 2017-04-05 | | 最終更新日 | 2018-08-22 | | 実験手法 | ELECTRON CRYSTALLOGRAPHY (2.5 Å) | | 主引用文献 | Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.
Nat. Methods, 14, 2017
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5K7T
 | | MicroED structure of thermolysin at 2.5 A resolution | | 分子名称: | CALCIUM ION, DIMETHYL SULFOXIDE, ISOPROPYL ALCOHOL, ... | | 著者 | de la Cruz, M.J, Hattne, J, Shi, D, Seidler, P, Rodriguez, J, Reyes, F.E, Sawaya, M.R, Cascio, D, Eisenberg, D, Gonen, T. | | 登録日 | 2016-05-26 | | 公開日 | 2017-04-05 | | 最終更新日 | 2024-02-28 | | 実験手法 | ELECTRON CRYSTALLOGRAPHY (2.5 Å) | | 主引用文献 | Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.
Nat. Methods, 14, 2017
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5K7O
 | | MicroED structure of lysozyme at 1.8 A resolution | | 分子名称: | CHLORIDE ION, Lysozyme C, SODIUM ION | | 著者 | de la Cruz, M.J, Hattne, J, Shi, D, Seidler, P, Rodriguez, J, Reyes, F.E, Sawaya, M.R, Cascio, D, Eisenberg, D, Gonen, T. | | 登録日 | 2016-05-26 | | 公開日 | 2017-04-05 | | 最終更新日 | 2018-08-22 | | 実験手法 | ELECTRON CRYSTALLOGRAPHY (1.8 Å) | | 主引用文献 | Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.
Nat. Methods, 14, 2017
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5K7N
 | | MicroED structure of tau VQIVYK peptide at 1.1 A resolution | | 分子名称: | VQIVYK | | 著者 | de la Cruz, M.J, Hattne, J, Shi, D, Seidler, P, Rodriguez, J, Reyes, F.E, Sawaya, M.R, Cascio, D, Eisenberg, D, Gonen, T. | | 登録日 | 2016-05-26 | | 公開日 | 2017-04-05 | | 最終更新日 | 2024-02-28 | | 実験手法 | ELECTRON CRYSTALLOGRAPHY (1.1 Å) | | 主引用文献 | Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.
Nat. Methods, 14, 2017
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