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MutB inactive double mutant D200A-D415N in complex with isomaltulose
分子名称:	6-O-alpha-D-glucopyranosyl-D-fructose, CALCIUM ION, Sucrose isomerase, ...
著者	Lipski, A, Haser, R, Aghajari, N.
登録日	2012-09-25
公開日	2013-09-25
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Insights into product binding in sucrose isomerases from crystal structures of MutB from Rhizobium sp. To be Published

8AES

Crystal structure of a thermophilic O6-alkylguanine-DNA alkyltransferase-derived self-labeling protein-tag
分子名称:	Methylated-DNA--protein-cysteine methyltransferase
著者	Genta, M, Perugino, G, Miggiano, R.
登録日	2022-07-13
公開日	2022-10-12
最終更新日	2024-03-27
実験手法	X-RAY DIFFRACTION (2.8 Å)
主引用文献	First thermostable CLIP- tag by rational design applied to an archaeal O 6 -alkyl-guanine-DNA-alkyl-transferase. Comput Struct Biotechnol J, 20, 2022

5DCC

X-RAY CRYSTAL STRUCTURE OF a TEBIPENEM ADDUCT OF L,D TRANSPEPTIDASE 2 FROM MYCOBACTERIUM TUBERCULOSIS
分子名称:	(4S)-4-methyl-2,5,7-trioxoheptanoic acid, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ...
著者	Pan, Y, Basta, L, Lamichhane, G, Bianchet, M.A.
登録日	2015-08-23
公開日	2016-09-28
最終更新日	2023-09-27
実験手法	X-RAY DIFFRACTION (2.451 Å)
主引用文献	Structural insight into the inactivation of Mycobacterium tuberculosis non-classical transpeptidase LdtMt2 by biapenem and tebipenem. BMC Biochem., 18, 2017

5DC2

X-RAY CRYSTAL STRUCTURE OF A ENZYMATICALLY DEGRADED BIAPENEM-ADDUCT OF L,D-TRANSPEPTIDASE 2 FROM MYCOBACTERIUM TUBERCULOSIS
分子名称:	(4S)-4-methyl-2,5,7-trioxoheptanoic acid, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ...
著者	Pan, Y, Basta, L, Lamichhane, G, Bianchet, M.A.
登録日	2015-08-23
公開日	2016-10-05
最終更新日	2019-12-11
実験手法	X-RAY DIFFRACTION (2.182 Å)
主引用文献	Structural insight into the inactivation of Mycobacterium tuberculosis non-classical transpeptidase LdtMt2 by biapenem and tebipenem. BMC Biochem., 18, 2017

6BOI

Crystal Structure of LdtMt2 (56-408) with a panipenem adduct at the active site cysteine-354
分子名称:	(3S,5R)-5-[(2R,3R)-1,3-dihydroxybutan-2-yl]-3-({(3R)-1-[(1E)-ethanimidoyl]pyrrolidin-3-yl}sulfanyl)-L-proline, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者	Saavedra, H, Bianchet, M.A.
登録日	2017-11-20
公開日	2018-04-11
最終更新日	2023-10-04
実験手法	X-RAY DIFFRACTION (2.102 Å)
主引用文献	Structures and Mechanism of Inhibition of Mycobacterium tuberculosis L,D-transpeptidase 2 by Panipenem To Be Published

3RL3

Rat metallophosphodiesterase MPPED2
分子名称:	1,2-ETHANEDIOL, CHLORIDE ION, GUANOSINE-5'-MONOPHOSPHATE, ...
著者	Podobnik, M, Dermol, U.
登録日	2011-04-19
公開日	2011-08-10
最終更新日	2024-02-28
実験手法	X-RAY DIFFRACTION (1.42 Å)
主引用文献	Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome. J.Mol.Biol., 412, 2011

3RL4

Rat metallophosphodiesterase MPPED2 G252H Mutant
分子名称:	1,2-ETHANEDIOL, CHLORIDE ION, GUANOSINE-5'-MONOPHOSPHATE, ...
著者	Podobnik, M, Dermol, U.
登録日	2011-04-19
公開日	2011-08-10
最終更新日	2024-02-28
実験手法	X-RAY DIFFRACTION (1.29 Å)
主引用文献	Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome. J.Mol.Biol., 412, 2011

3RL5

Rat metallophosphodiesterase MPPED2 H67R Mutant
分子名称:	1,2-ETHANEDIOL, CALCIUM ION, Metallophosphoesterase MPPED2, ...
著者	Podobnik, M, Dermol, U.
登録日	2011-04-19
公開日	2011-08-10
最終更新日	2024-02-28
実験手法	X-RAY DIFFRACTION (1.26 Å)
主引用文献	Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome. J.Mol.Biol., 412, 2011

5K69

Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T224
分子名称:	(2~{S},3~{R},4~{R})-4-(1~{H}-indol-3-ylsulfanyl)-3-methyl-2-[(2~{S},3~{S})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid, GLYCEROL, L,D-transpeptidase 2
著者	Lamichhane, G, Ginell, S.L, Kumar, P.
登録日	2016-05-24
公開日	2016-11-09
最終更新日	2023-09-27
実験手法	X-RAY DIFFRACTION (2.001 Å)
主引用文献	Non-classical transpeptidases yield insight into new antibacterials. Nat. Chem. Biol., 13, 2017

3IB7

Crystal structure of full length Rv0805
分子名称:	(4S)-2-METHYL-2,4-PENTANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
著者	Podobnik, M, Dermol, U.
登録日	2009-07-15
公開日	2009-09-29
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (1.6 Å)
主引用文献	A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability J.Biol.Chem., 284, 2009

3IB8

Crystal structure of full length Rv0805 in complex with 5'-AMP
分子名称:	(4S)-2-METHYL-2,4-PENTANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
著者	Podobnik, M, Dermol, U.
登録日	2009-07-15
公開日	2009-09-29
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (1.8 Å)
主引用文献	A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability J.Biol.Chem., 284, 2009

3I9G

Crystal structure of the LT1009 (SONEPCIZUMAB) antibody Fab fragment in complex with sphingosine-1-phosphate
分子名称:	(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, CALCIUM ION, MAGNESIUM ION, ...
著者	Huxford, T.
登録日	2009-07-10
公開日	2009-09-29
最終更新日	2011-07-13
実験手法	X-RAY DIFFRACTION (1.9 Å)
主引用文献	The crystal structure of sphingosine-1-phosphate in complex with a Fab fragment reveals metal bridging of an antibody and its antigen. Proc.Natl.Acad.Sci.USA, 106, 2009

5D7H

X-RAY CRYSTAL STRUCTURE OF L,D TRANSPEPTIDASE 2 FROM MYCOBACTERIUM TUBERCULOSIS
分子名称:	GLYCEROL, L,D-transpeptidase 2, SULFATE ION
著者	Saavedra, H, Basta, L.A, Lamichhane, G, Bianchet, M.A.
登録日	2015-08-13
公開日	2016-09-28
最終更新日	2024-03-06
実験手法	X-RAY DIFFRACTION (2.49 Å)
主引用文献	Structural insight into the inactivation of Mycobacterium tuberculosis non-classical transpeptidase LdtMt2 by biapenem and tebipenem. BMC Biochem., 18, 2017

5DUJ

Crystal structure of ldtMt2 in complex with Faropenem adduct
分子名称:	(2R,5R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-[(2R)-tetrahydrofuran-2-yl]-2,5-dihydro-1,3-thiazole-4-carboxylic acid, BETA-MERCAPTOETHANOL, L,D-transpeptidase 2, ...
著者	Kumar, P, Lamichhane, G.
登録日	2015-09-18
公開日	2016-09-28
最終更新日	2023-09-27
実験手法	X-RAY DIFFRACTION (2.17 Å)
主引用文献	Non-classical transpeptidases yield insight into new antibacterials. Nat. Chem. Biol., 13, 2017

5DU7

Crystal structure of ldtMt2 at 1.79 Angstrom resolution
分子名称:	L,D-transpeptidase 2
著者	Kumar, P, Lamichhane, G.
登録日	2015-09-18
公開日	2016-09-28
最終更新日	2023-09-27
実験手法	X-RAY DIFFRACTION (1.79 Å)
主引用文献	Non-classical transpeptidases yield insight into new antibacterials. Nat. Chem. Biol., 13, 2017

5E1I

Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T210
分子名称:	(2S,3R,4R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-4-(methylsulfanyl)-3,4-dihydro-2H-pyrrole-5-carboxylic acid, GLYCEROL, L,D-transpeptidase 2, ...
著者	Kumar, P, Ginell, S.L, Lamichhane, G.
登録日	2015-09-29
公開日	2016-10-12
最終更新日	2023-09-27
実験手法	X-RAY DIFFRACTION (2.003 Å)
主引用文献	Non-classical transpeptidases yield insight into new antibacterials. Nat. Chem. Biol., 13, 2017

5E51

Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 1 with Faropenem adduct
分子名称:	(3R)-3-hydroxybutanal, L,D-transpeptidase 1
著者	Kumar, P, Lamichhane, G, Ginell, S.L.
登録日	2015-10-07
公開日	2016-10-26
最終更新日	2023-09-27
実験手法	X-RAY DIFFRACTION (2.25 Å)
主引用文献	Non-classical transpeptidases yield insight into new antibacterials. Nat. Chem. Biol., 13, 2017

5DVP

Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with Doripenem adduct
分子名称:	(2S,3R,4S)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-4-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-3,4-dihydro-2H-pyrrole-5-carboxylic acid, L,D-transpeptidase 2, PHOSPHONOACETALDEHYDE, ...
著者	Kumar, P, Lamichhane, G.
登録日	2015-09-21
公開日	2016-09-28
最終更新日	2023-09-27
実験手法	X-RAY DIFFRACTION (2.18 Å)
主引用文献	Non-classical transpeptidases yield insight into new antibacterials. Nat. Chem. Biol., 13, 2017

5E1G

Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T208
分子名称:	(2~{S},3~{R},4~{R})-4-(2-cyclohexyloxy-2-oxidanylidene-ethyl)sulfanyl-3-methyl-2-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid, L,D-transpeptidase 2
著者	Kumar, P, Lamichhane, G, Ginell, S.L.
登録日	2015-09-29
公開日	2016-10-12
最終更新日	2023-09-27
実験手法	X-RAY DIFFRACTION (1.852 Å)
主引用文献	Non-classical transpeptidases yield insight into new antibacterials. Nat. Chem. Biol., 13, 2017

5DZP

Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T206 in conformation B
分子名称:	(2~{R},3~{R},4~{R})-4-methyl-3-(2-oxidanylidene-2-propoxy-ethyl)sulfanyl-5-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-2-carboxylic acid, L,D-transpeptidase 2
著者	Kumar, P, Ginell, S.L, Lamichhane, G.
登録日	2015-09-25
公開日	2016-10-05
最終更新日	2023-09-27
実験手法	X-RAY DIFFRACTION (2.19 Å)
主引用文献	Non-classical transpeptidases yield insight into new antibacterials. Nat. Chem. Biol., 13, 2017

5DZJ

Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T206 in conformation A
分子名称:	(2~{R},3~{R},4~{R})-4-methyl-3-(2-oxidanylidene-2-propoxy-ethyl)sulfanyl-5-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-2-carboxylic acid, L,D-transpeptidase 2
著者	Kumar, P, Ginell, S.L, Lamichhane, G.
登録日	2015-09-25
公開日	2016-10-05
最終更新日	2023-09-27
実験手法	X-RAY DIFFRACTION (2.095 Å)
主引用文献	Non-classical transpeptidases yield insight into new antibacterials. Nat. Chem. Biol., 13, 2017

5E5L

Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 1 at 1.89 Angstrom
分子名称:	L,D-transpeptidase 1
著者	Kumar, P, Lamichhane, G, Ginell, S.L.
登録日	2015-10-08
公開日	2016-10-26
最終更新日	2024-03-06
実験手法	X-RAY DIFFRACTION (1.89 Å)
主引用文献	Non-classical transpeptidases yield insight into new antibacterials. Nat. Chem. Biol., 13, 2017

2PJW

The Vps27/Hse1 complex is a GAT domain-based scaffold for ubiquitin-dependent sorting
分子名称:	Uncharacterized protein YHL002W, Vacuolar protein sorting-associated protein 27
著者	Prag, G, Hurley, J.H.
登録日	2007-04-16
公開日	2007-06-05
最終更新日	2017-10-18
実験手法	X-RAY DIFFRACTION (3.01 Å)
主引用文献	The Vps27/Hse1 Complex Is a GAT Domain-Based Scaffold for Ubiquitin-Dependent Sorting. Dev.Cell, 12, 2007

2FIF

Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin
分子名称:	Rab5 GDP/GTP exchange factor, SULFATE ION, Ubiquitin, ...
著者	Lee, S, Hurley, J.H.
登録日	2005-12-29
公開日	2006-02-07
最終更新日	2023-08-30
実験手法	X-RAY DIFFRACTION (2.49 Å)
主引用文献	Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5 Nat.Struct.Mol.Biol., 13, 2006

2FID

Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin
分子名称:	Rab5 GDP/GTP exchange factor, Ubiquitin, ZINC ION
著者	Lee, S, Hurley, J.H.
登録日	2005-12-29
公開日	2006-02-07
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.8 Å)
主引用文献	Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5 Nat.Struct.Mol.Biol., 13, 2006

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