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7L6U
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BU of 7l6u by Molmil
Unliganded ELIC in POPC-only nanodiscs at 3.3-Angstrom resolution
分子名称: Gamma-aminobutyric-acid receptor subunit beta-1
著者Kumar, P, Grosman, C.
登録日2020-12-23
公開日2021-06-23
最終更新日2025-05-14
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure and function at the lipid-protein interface of a pentameric ligand-gated ion channel.
Proc.Natl.Acad.Sci.USA, 118, 2021
4R7E
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BU of 4r7e by Molmil
Structure of Bre1 RING domain
分子名称: E3 ubiquitin-protein ligase BRE1, ZINC ION
著者Kumar, P, Wolberger, C.
登録日2014-08-27
公開日2015-05-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.251 Å)
主引用文献Structure of the yeast Bre1 RING domain.
Proteins, 83, 2015
7K34
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BU of 7k34 by Molmil
Crystal structure of L-threonine transaldolase from Pseudomonas fluorescens in internal aldimine state
分子名称: SULFATE ION, Threonine aldolase
著者Kumar, P, Bingman, C.A, Buller, A.R.
登録日2020-09-10
公開日2020-12-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献l-Threonine Transaldolase Activity Is Enabled by a Persistent Catalytic Intermediate.
Acs Chem.Biol., 16, 2021
6AAL
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BU of 6aal by Molmil
Crystal Structure of putative amino acid binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus in complex with Arginine
分子名称: 1,2-ETHANEDIOL, ACETATE ION, ARGININE, ...
著者Kumar, P, Kesari, P, Ghosh, D.K, Kumar, P, Sharma, A.K.
登録日2018-07-18
公開日2019-06-12
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structures of a putative periplasmic cystine-binding protein from Candidatus Liberibacter asiaticus: insights into an adapted mechanism of ligand binding.
Febs J., 286, 2019
6A80
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BU of 6a80 by Molmil
Crystal Structure of putative amino acid binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus in complex with cystine
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
著者Kumar, P, Kesari, P, Ghosh, D.K, Kumar, P, Sharma, A.K.
登録日2018-07-05
公開日2019-06-12
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Crystal structures of a putative periplasmic cystine-binding protein from Candidatus Liberibacter asiaticus: insights into an adapted mechanism of ligand binding.
Febs J., 286, 2019
6A8S
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BU of 6a8s by Molmil
Crystal Structure of the putative amino acid-binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus in complex with Cysteine
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
著者Kumar, P, Kesari, P, Ghosh, D.K, Kumar, P, Sharma, A.K.
登録日2018-07-10
公開日2019-06-12
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal structures of a putative periplasmic cystine-binding protein from Candidatus Liberibacter asiaticus: insights into an adapted mechanism of ligand binding.
Febs J., 286, 2019
6AA1
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BU of 6aa1 by Molmil
Crystal structure of putative amino acid binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus bound with citrate
分子名称: 1,2-ETHANEDIOL, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ...
著者Kumar, P, Kesari, P, Ghosh, D.K, Kumar, P, Sharma, A.K.
登録日2018-07-16
公開日2019-06-12
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Crystal structures of a putative periplasmic cystine-binding protein from Candidatus Liberibacter asiaticus: insights into an adapted mechanism of ligand binding.
Febs J., 286, 2019
6IXI
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BU of 6ixi by Molmil
structure of Cd-bound periplasmic metal binding protein from candidatus liberibacter asiaticus
分子名称: ACETATE ION, CADMIUM ION, GLYCEROL, ...
著者Kumar, P, Sharma, N, Dalal, V, Ghosh, D.K, Kumar, P, Sharma, A.K.
登録日2018-12-10
公開日2020-01-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Characterization of the heavy metal binding properties of periplasmic metal uptake protein CLas-ZnuA2.
Metallomics, 12, 2020
4NOF
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BU of 4nof by Molmil
Crystal structure of the second Ig domain from mouse Polymeric Immunoglobulin receptor [PSI-NYSGRC-006220]
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Polymeric immunoglobulin receptor
著者Sampathkumar, P, Kumar, P.R, Ahmed, M, Banu, R, Bhosle, R, Calarese, D.A, Celikgil, A, Chamala, S, Chan, M.K, Chowdhury, S, Fiser, A, Garforth, S.J, Glenn, A.S, Hillerich, B, Khafizov, K, Attonito, J, Love, J.D, Patel, H, Patel, R, Seidel, R.D, Smith, B, Stead, M, Casadevall, A, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)
登録日2013-11-19
公開日2013-12-04
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of the second Ig domain from mouse Polymeric Immunoglobulin receptor
to be published
8GYR
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BU of 8gyr by Molmil
Crystal structure of a variable region segment of Leptospira host-interacting outer surface protein, LigA
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
著者Kumar, P, Akif, M.
登録日2022-09-23
公開日2023-06-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Crystal structure of a variable region segment of Leptospira host-interacting outer surface protein, LigA, reveals the orientation of Ig-like domains.
Int.J.Biol.Macromol., 244, 2023
8UJG
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BU of 8ujg by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and the mono-glycopeptide Srs13.2
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-11
公開日2024-05-15
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UI1
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BU of 8ui1 by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 at pH 7.3
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, Glycosyl transferase, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-09
公開日2024-05-15
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UJE
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BU of 8uje by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and Muc5AC-3,13
分子名称: DI(HYDROXYETHYL)ETHER, Glycosyl transferase, MANGANESE (II) ION, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-11
公開日2024-05-15
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UJF
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BU of 8ujf by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and Muc5AC-3,13
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glycosyl transferase, MANGANESE (II) ION, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-11
公開日2024-05-15
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.87 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UI6
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BU of 8ui6 by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and Muc5AC-3,13
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Glycosyl transferase, MANGANESE (II) ION, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-10
公開日2024-05-15
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UJH
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BU of 8ujh by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and a CST1 diglycopeptide.
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, GLYCEROL, Glycosyl transferase, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-11
公開日2024-05-15
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UHZ
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BU of 8uhz by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with Mn2+
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, Glycosyl transferase, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-09
公開日2024-05-15
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UHV
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BU of 8uhv by Molmil
X-ray crystal structure of Toxoplasma gondii Apo GalNAc-T3
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, Glycosyl transferase
著者Kumar, P, Samara, N.L.
登録日2023-10-09
公開日2024-05-15
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8ZLC
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BU of 8zlc by Molmil
Crystal Structure of Ankyrin Repeat Protein from Plasmodium falciparum
分子名称: Ankyrin-repeat protein
著者Kumari, P, Gautam, A.K, Gourinath, S, Malhotra, P.
登録日2024-05-18
公開日2025-05-21
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Crystal Structure of Ankyrin Repeat Protein from Plasmodium falciparum
To Be Published
3CV0
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BU of 3cv0 by Molmil
Structure of Peroxisomal Targeting Signal 1 (PTS1) binding domain of Trypanosoma brucei Peroxin 5 (TbPEX5)complexed to T. brucei Phosphoglucoisomerase (PGI) PTS1 peptide
分子名称: 1,2-ETHANEDIOL, Peroxisome targeting signal 1 receptor PEX5, T. brucei PGI PTS1 peptide Ac-FNELSHL
著者Sampathkumar, P, Roach, C, Michels, P.A.M, Hol, W.G.J.
登録日2008-04-17
公開日2008-06-24
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Insights into the recognition of peroxisomal targeting signal 1 by Trypanosoma brucei peroxin 5.
J.Mol.Biol., 381, 2008
9BA0
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BU of 9ba0 by Molmil
Structural mechanism of CB1R binding to peripheral and biased inverse agonists
分子名称: CNb36, Cannabinoid receptor 1,Glycogen synthase, N-(N-{(E)-[(4S)-3-(4-chlorophenyl)-4-phenyl-4,5-dihydro-1H-pyrazol-1-yl][4-(trifluoromethyl)benzene-1-sulfonamido]methylidene}carbamimidoyl)acetamide
著者Kumari, P, Dvoracsko, S, Enos, M.D, Ramesh, K, Lim, D, Hassan, S.A, Kunos, G, Cinar, R, Iyer, M.R, Rosenbaum, D.M.
登録日2024-04-03
公開日2024-11-20
最終更新日2025-05-28
実験手法ELECTRON MICROSCOPY (3.13 Å)
主引用文献Structural mechanism of CB 1 R binding to peripheral and biased inverse agonists.
Nat Commun, 15, 2024
6LE1
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BU of 6le1 by Molmil
Structure of RRM2 domain of DND1 protein
分子名称: Dead end protein homolog 1, GLYCEROL, SULFATE ION
著者Kumari, P, Bhavesh, N.S.
登録日2019-11-23
公開日2020-12-02
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Human DND1-RRM2 forms a non-canonical domain swapped dimer.
Protein Sci., 30, 2021
6FQ3
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BU of 6fq3 by Molmil
Crystal structure of Danio rerio Lin41 filamin-NHL domains in complex with lin-29A 5'UTR 13mer RNA
分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase TRIM71, RNA (5'-R(*GP*GP*AP*GP*UP*CP*CP*AP*AP*CP*UP*CP*C)-3')
著者Kumari, P, Aeschimann, F, Gaidatzis, D, Keusch, J.J, Ghosh, P, Neagu, A, Pachulska-Wieczorek, K, Bujnicki, J.M, Gut, H, Grosshans, H, Ciosk, R.
登録日2018-02-13
公開日2018-05-09
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.901 Å)
主引用文献Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun, 9, 2018
6FPT
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BU of 6fpt by Molmil
Crystal structure of Danio rerio Lin41 filamin-NHL domains
分子名称: E3 ubiquitin-protein ligase TRIM71
著者Kumari, P, Aeschimann, F, Gaidatzis, D, Keusch, J.J, Ghosh, P, Neagu, A, Pachulska-Wieczorek, K, Bujnicki, J.M, Gut, H, Grosshans, H, Ciosk, R.
登録日2018-02-12
公開日2018-05-09
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun, 9, 2018
6FQL
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BU of 6fql by Molmil
Crystal structure of Danio rerio Lin41 filamin-NHL domains in complex with mab-10 3'UTR 13mer RNA
分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase TRIM71, RNA (5'-R(*UP*GP*CP*AP*UP*UP*UP*AP*AP*UP*GP*CP*A)-3')
著者Kumari, P, Aeschimann, F, Gaidatzis, D, Keusch, J.J, Ghosh, P, Neagu, A, Pachulska-Wieczorek, K, Bujnicki, J.M, Gut, H, Grosshans, H, Ciosk, R.
登録日2018-02-14
公開日2018-05-09
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.349 Å)
主引用文献Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun, 9, 2018

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