Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8PT5
DownloadVisualize
BU of 8pt5 by Molmil
ERK2 covelently bound to RU187 cyclohexenone based inhibitor
分子名称: GLYCEROL, Mitogen-activated protein kinase 1, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Sok, P, Poti, A, Remenyi, A.
登録日2023-07-13
公開日2024-07-24
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Targeting a key protein-protein interaction surface on mitogen-activated protein kinases by a precision-guided warhead scaffold.
Nat Commun, 15, 2024
5FKB
DownloadVisualize
BU of 5fkb by Molmil
Structure of D80A-fructofuranosidase from Xanthophyllomyces dendrorhous complexed with 1-Kestose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-FRUCTOFURANOSIDASE, ...
著者Ramirez-Escudero, M, Sanz-Aparicio, J.
登録日2015-10-15
公開日2016-02-10
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Structural Analysis of Beta-Fructofuranosidase from Xanthophyllomyces Dendrorhous Reveals Unique Features and the Crucial Role of N-Glycosylation in Oligomerization and Activity
J.Biol.Chem., 291, 2016
9G15
DownloadVisualize
BU of 9g15 by Molmil
Crystal structure of marine actinobacteria clade rhodopsin (MAR) in the O* state, pH 8.8
分子名称: Bacteriorhodopsin, EICOSANE, OLEIC ACID, ...
著者Bukhdruker, S, Kovalev, K, Astashkin, R, Gordeliy, V.
登録日2024-07-09
公開日2025-04-02
最終更新日2025-07-02
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Proteorhodopsin insights into the molecular mechanism of vectorial proton transport.
Sci Adv, 11, 2025
9G16
DownloadVisualize
BU of 9g16 by Molmil
Crystal structure of marine actinobacteria clade rhodopsin (MAR) in the O state obtained by cryotrapping
分子名称: Bacteriorhodopsin, EICOSANE, OLEIC ACID, ...
著者Bukhdruker, S, Kovalev, K, Astashkin, R, Gordeliy, V.
登録日2024-07-09
公開日2025-04-02
最終更新日2025-07-02
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Proteorhodopsin insights into the molecular mechanism of vectorial proton transport.
Sci Adv, 11, 2025
5LCT
DownloadVisualize
BU of 5lct by Molmil
Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with a R-methyl-piperazine substituted Fasudil-derivative (Ligand 02)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 5-[(2~{R})-2-methylpiperazin-1-yl]sulfonylisoquinoline, METHANOL, ...
著者Wienen-Schmidt, B, Heine, A, Klebe, G.
登録日2016-06-22
公開日2018-01-17
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.615 Å)
主引用文献Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with different Fasudil-derivatives
To Be Published
8QWX
DownloadVisualize
BU of 8qwx by Molmil
Ligninolytic manganese peroxidase Ape-MnP1 from Agaricales mushrooms
分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Santillana, E, Romero, A.
登録日2023-10-20
公開日2024-06-26
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure-function characterization of two enzymes from novel subfamilies of manganese peroxidases secreted by the lignocellulose-degrading Agaricales fungi Agrocybe pediades and Cyathus striatus.
Biotechnol Biofuels Bioprod, 17, 2024
8QX0
DownloadVisualize
BU of 8qx0 by Molmil
Ligninolytic manganese peroxidase Ape-MnP1 from Agaricales mushrooms in complex with a manganese ion
分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Santillana, E, Romero, A.
登録日2023-10-20
公開日2024-06-26
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.247 Å)
主引用文献Structure-function characterization of two enzymes from novel subfamilies of manganese peroxidases secreted by the lignocellulose-degrading Agaricales fungi Agrocybe pediades and Cyathus striatus.
Biotechnol Biofuels Bioprod, 17, 2024
8QWT
DownloadVisualize
BU of 8qwt by Molmil
Ligninolytic manganese peroxidase Cst-MnP1 from Agaricales mushrooms in complex with a manganese ion
分子名称: CALCIUM ION, GLYCEROL, MAGNESIUM ION, ...
著者Santillana, E, Romero, A.
登録日2023-10-20
公開日2024-06-26
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure-function characterization of two enzymes from novel subfamilies of manganese peroxidases secreted by the lignocellulose-degrading Agaricales fungi Agrocybe pediades and Cyathus striatus.
Biotechnol Biofuels Bioprod, 17, 2024
5LCU
DownloadVisualize
BU of 5lcu by Molmil
Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with a S-methyl-piperazine substituted Fasudil-derivative (Ligand 01)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1-(5-ISOQUINOLINESULFONYL)-2-METHYLPIPERAZINE, METHANOL, ...
著者Wienen-Schmidt, B, Heine, A, Klebe, G.
登録日2016-06-22
公開日2018-01-17
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.579 Å)
主引用文献Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with different Fasudil-derivatives
To Be Published
5M71
DownloadVisualize
BU of 5m71 by Molmil
Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with an (R)-methyl substitued Fasudil-derivative.
分子名称: 5-[[(2~{R})-2-methyl-1,4-diazepan-4-ium-1-yl]sulfonyl]isoquinoline, METHANOL, cAMP-dependent protein kinase catalytic subunit alpha, ...
著者Wienen-Schmidt, B, Heine, A, Klebe, G.
登録日2016-10-26
公開日2018-06-06
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.488 Å)
主引用文献Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with differently methylated Fasudil-derived ligands
To be Published
5UR5
DownloadVisualize
BU of 5ur5 by Molmil
PYR1 bound to the rationally designed agonist 4m
分子名称: Abscisic acid receptor PYR1, GLYCEROL, N-(4-cyano-3-ethyl-5-methylphenyl)-1-(4-methylphenyl)methanesulfonamide, ...
著者Peterson, F.C, Vaidya, A, Jensen, D.R, Volkman, B.F, Cutler, S.R.
登録日2017-02-09
公開日2017-11-29
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献A Rationally Designed Agonist Defines Subfamily IIIA Abscisic Acid Receptors As Critical Targets for Manipulating Transpiration.
ACS Chem. Biol., 12, 2017
5FMC
DownloadVisualize
BU of 5fmc by Molmil
Structure of D80A-fructofuranosidase from Xanthophyllomyces dendrorhous complexed with fructose and BIS-TRIS propane buffer
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Ramirez-Escudero, M, Sanz-Aparicio, J.
登録日2015-11-02
公開日2016-02-10
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural Analysis of Beta-Fructofuranosidase from Xanthophyllomyces Dendrorhous Reveals Unique Features and the Crucial Role of N-Glycosylation in Oligomerization and Activity
J.Biol.Chem., 291, 2016
5M6V
DownloadVisualize
BU of 5m6v by Molmil
Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with a double methylated Fasudil-derivative
分子名称: (S)-2-METHYL-1-[(4-METHYL-5-ISOQUINOLINE)SULFONYL]-HOMOPIPERAZINE, cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor alpha
著者Wienen-Schmidt, B, Heine, A, Klebe, G.
登録日2016-10-26
公開日2018-06-06
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.418 Å)
主引用文献Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with different Fasudil-derivatives
To be Published
5LCQ
DownloadVisualize
BU of 5lcq by Molmil
Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with long-chain Fasudil-derivative (Ligand 05)
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, METHANOL, cAMP-dependent protein kinase catalytic subunit alpha, ...
著者Wienen-Schmidt, B, Heine, A, Klebe, G.
登録日2016-06-22
公開日2018-01-17
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.423 Å)
主引用文献Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with different Fasudil-derivatives
To Be Published
8R1M
DownloadVisualize
BU of 8r1m by Molmil
Structure of TxGH116 with covalently bound N-azido-octyl aziridine
分子名称: (1R,2R,3R,4S)-4-[8-(azanyldiazenyl)octylamino]-3-(hydroxymethyl)cyclopentane-1,2-diol, CALCIUM ION, CHLORIDE ION, ...
著者Offen, W.A, Davies, G.J.
登録日2023-11-02
公開日2024-10-02
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Selective labelling of GBA2 in cells with fluorescent beta-d-arabinofuranosyl cyclitol aziridines.
Chem Sci, 15, 2024
5FKC
DownloadVisualize
BU of 5fkc by Molmil
Structure of D80A-fructofuranosidase from Xanthophyllomyces dendrorhous complexed with Raffinose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-FRUCTOFURANOSIDASE, ...
著者Ramirez-Escudero, M, Sanz-Aparicio, J.
登録日2015-10-15
公開日2016-02-10
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Structural Analysis of Beta-Fructofuranosidase from Xanthophyllomyces Dendrorhous Reveals Unique Features and the Crucial Role of N-Glycosylation in Oligomerization and Activity
J.Biol.Chem., 291, 2016
5M0B
DownloadVisualize
BU of 5m0b by Molmil
Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with a short-chained N-(2-aminoethyl)isoquinoline-5-sulfonamide) Fasudil-derivative (Ligand 03)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, METHANOL, N-(2-AMINOETHYL)ISOQUINOLINE-5-SULFONAMIDE, ...
著者Wienen-Schmidt, B, Heine, A, Klebe, G.
登録日2016-10-04
公開日2018-06-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.506 Å)
主引用文献Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with different Fasudil-derivatives
To Be Published
5WRN
DownloadVisualize
BU of 5wrn by Molmil
Human thymidylate synthase complexed with dCMP
分子名称: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, Thymidylate synthase
著者Chen, D, Nordlund, P.
登録日2016-12-02
公開日2016-12-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Human thymidylate synthase complexed with dCMP
To Be Published
9F41
DownloadVisualize
BU of 9f41 by Molmil
Crystal structure of the NTD domain from S. cerevisia Niemann-Pick type C protein NCR1 with cholesterol bound
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHOLESTEROL, DI(HYDROXYETHYL)ETHER, ...
著者Nel, L, Olesen, E, Frain, K.M, Pedersen, B.P.
登録日2024-04-26
公開日2024-05-29
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Structural and biochemical analysis of ligand binding in yeast Niemann-Pick type C1-related protein.
Life Sci Alliance, 8, 2025
9F40
DownloadVisualize
BU of 9f40 by Molmil
Crystal structure of the NTD domain from S. cerevisia Niemann-Pick type C protein NCR1 with ergosterol bound
分子名称: ACETONITRILE, DI(HYDROXYETHYL)ETHER, ERGOSTEROL, ...
著者Nel, L, Olesen, E, Frain, K.M, Pedersen, B.P.
登録日2024-04-26
公開日2024-05-29
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献Structural and biochemical analysis of ligand binding in yeast Niemann-Pick type C1-related protein.
Life Sci Alliance, 8, 2025
1K1C
DownloadVisualize
BU of 1k1c by Molmil
Solution Structure of Crh, the Bacillus subtilis Catabolite Repression HPr
分子名称: catabolite repression HPr-like protein
著者Favier, A, Brutscher, B, Blackledge, M, Galinier, A, Deutscher, J, Penin, F, Marion, D.
登録日2001-09-25
公開日2001-10-17
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure and dynamics of Crh, the Bacillus subtilis catabolite repression HPr.
J.Mol.Biol., 317, 2002
9DI6
DownloadVisualize
BU of 9di6 by Molmil
Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM679 (ethyl 1,4-dimethyl-5-((6-(trifluoromethyl)pyridin-3-yl)methyl)-1H-pyrazole-3-carboxylate)
分子名称: 6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione, CITRIC ACID, Dihydroorotate dehydrogenase (quinone), ...
著者Deng, X, Tomchick, D, Phillips, M.
登録日2024-09-05
公開日2025-01-01
最終更新日2025-01-29
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Structure-Based Discovery and Development of Highly Potent Dihydroorotate Dehydrogenase Inhibitors for Malaria Chemoprevention.
J.Med.Chem., 68, 2025
9DIK
DownloadVisualize
BU of 9dik by Molmil
Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM681 (N-cyclopropyl-1,4-dimethyl-5-((6-(trifluoromethyl)pyridin-3-yl)methyl)-1H-pyrazole-3-carboxamide)
分子名称: 6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione, Dihydroorotate dehydrogenase (quinone), mitochondrial, ...
著者Deng, X, Tomchick, D, Phillips, M.
登録日2024-09-05
公開日2025-01-01
最終更新日2025-01-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure-Based Discovery and Development of Highly Potent Dihydroorotate Dehydrogenase Inhibitors for Malaria Chemoprevention.
J.Med.Chem., 68, 2025
9DIZ
DownloadVisualize
BU of 9diz by Molmil
Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM959 (6-cyclopropyl-2,4-dimethyl-3-((6-(trifluoromethyl)pyridin-3-yl)methyl)-2,6-dihydro-7H-pyrazolo[3,4-c]pyridin-7-one)
分子名称: 6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione, 6-cyclopropyl-2,4-dimethyl-3-{[6-(trifluoromethyl)pyridin-3-yl]methyl}-2,6-dihydro-7H-pyrazolo[3,4-c]pyridin-7-one, Dihydroorotate dehydrogenase (quinone), ...
著者Deng, X, Tomchick, D, Phillips, M.
登録日2024-09-06
公開日2025-01-01
最終更新日2025-01-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structure-Based Discovery and Development of Highly Potent Dihydroorotate Dehydrogenase Inhibitors for Malaria Chemoprevention.
J.Med.Chem., 68, 2025
9DKY
DownloadVisualize
BU of 9dky by Molmil
Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM1174 (3-((7-azaspiro[3.5]nonan-7-yl)methyl)-4-cyclopropyl-6-ethyl-2-methyl-2,6-dihydro-7H-pyrazolo[3,4-c]pyridin-7-one)
分子名称: 3-[(7-azaspiro[3.5]nonan-7-yl)methyl]-4-cyclopropyl-6-ethyl-2-methyl-2,6-dihydro-7H-pyrazolo[3,4-c]pyridin-7-one, 6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione, Dihydroorotate dehydrogenase (quinone), ...
著者Deng, X, Tomchick, D, Phillips, M.
登録日2024-09-10
公開日2025-01-01
最終更新日2025-01-22
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structure-Based Discovery and Development of Highly Potent Dihydroorotate Dehydrogenase Inhibitors for Malaria Chemoprevention.
J.Med.Chem., 68, 2025

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon