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4GND
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BU of 4gnd by Molmil
Crystal Structure of NSD3 tandem PHD5-C5HCH domains
分子名称: Histone-lysine N-methyltransferase NSD3, ZINC ION
著者Li, F, He, C, Wu, J, Shi, Y.
登録日2012-08-17
公開日2013-01-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献The methyltransferase NSD3 has chromatin-binding motifs, PHD5-C5HCH, that are distinct from other NSD (nuclear receptor SET domain) family members in their histone H3 recognition.
J.Biol.Chem., 288, 2013
5GS6
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BU of 5gs6 by Molmil
Full-length NS1 structure of Zika virus from 2015 Brazil strain
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, NS1 of Zika virus from 2015 Brazil strain
著者Xu, X.Y, Song, H, Qi, J.X, Shi, Y, Gao, G.F.
登録日2016-08-14
公開日2016-10-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.852 Å)
主引用文献Contribution of intertwined loop to membrane association revealed by Zika virus full-length NS1 structure
Embo J., 35, 2016
5GI4
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BU of 5gi4 by Molmil
DEAD-box RNA helicase
分子名称: ATP-dependent RNA helicase DeaD
著者Xu, L, Wang, L, Li, F, Wu, L, Shi, Y.
登録日2016-06-22
公開日2017-05-31
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.244 Å)
主引用文献Insights into the Structure of Dimeric RNA Helicase CsdA and Indispensable Role of Its C-Terminal Regions.
Structure, 25, 2017
1Q4Q
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BU of 1q4q by Molmil
Crystal structure of a DIAP1-Dronc complex
分子名称: Apoptosis 1 inhibitor, Nedd2-like caspase CG8091-PA, ZINC ION
著者Chai, J, Yan, N, Shi, Y.
登録日2003-08-04
公開日2003-11-04
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Molecular mechanism of Reaper-Grim-Hid-mediated suppression of DIAP1-dependent Dronc ubiquitination
Nat.Struct.Biol., 10, 2003
1MR1
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BU of 1mr1 by Molmil
Crystal Structure of a Smad4-Ski Complex
分子名称: Mothers against decapentaplegic homolog 4, Ski oncogene, ZINC ION
著者Wu, J.-W, Krawitz, A.R, Chai, J, Li, W, Zhang, F, Luo, K, Shi, Y.
登録日2002-09-17
公開日2003-01-21
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structural Mechanism of Smad4 Recognition by the Nuclear Oncoprotein Ski: Insights on Ski-mediated Repression of TGF-beta Signaling
Cell(Cambridge,Mass.), 111, 2002
8Y6P
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BU of 8y6p by Molmil
Structure of the auto-inhibited Dark monomer
分子名称: Apaf-1 related killer DARK
著者Tian, L, Li, Y, Shi, Y.
登録日2024-02-03
公開日2024-04-10
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Dark and Dronc activation in Drosophila melanogaster.
Proc.Natl.Acad.Sci.USA, 121, 2024
2JXW
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BU of 2jxw by Molmil
Solution Structure of the Tandem WW Domains of FBP21
分子名称: WW domain-binding protein 4
著者Huang, X, Zhang, J, Wu, J, Shi, Y.
登録日2007-11-30
公開日2008-12-02
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure and function of the two tandem WW domains of the pre-mRNA splicing factor FBP21 (formin-binding protein 21)
J.Biol.Chem., 284, 2009
8Y6Q
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BU of 8y6q by Molmil
Structure of the Dark/Dronc complex
分子名称: Apaf-1 related killer DARK, Caspase Dronc
著者Tian, L, Li, Y, Shi, Y.
登録日2024-02-03
公開日2024-08-07
実験手法ELECTRON MICROSCOPY (7 Å)
主引用文献Dark and Dronc activation in Drosophila melanogaster.
Proc.Natl.Acad.Sci.USA, 121, 2024
8GRX
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BU of 8grx by Molmil
APOE4 receptor in complex with APOE4 NTD
分子名称: Apolipoprotein E, Leukocyte immunoglobulin-like receptor subfamily A member 6
著者Zhou, J, Wang, Y, Huang, G, Shi, Y.
登録日2022-09-02
公開日2023-07-05
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献LilrB3 is a putative cell surface receptor of APOE4.
Cell Res., 33, 2023
3H11
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BU of 3h11 by Molmil
Zymogen caspase-8:c-FLIPL protease domain complex
分子名称: CASP8 and FADD-like apoptosis regulator, Caspase-8, IETD aldehyde inhibitor
著者Jeffrey, P.D, Yu, J.W, Shi, Y.
登録日2009-04-10
公開日2009-04-28
最終更新日2021-10-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mechanism of procaspase-8 activation by c-FLIPL.
Proc.Natl.Acad.Sci.USA, 106, 2009
3H13
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BU of 3h13 by Molmil
c-FLIPL protease-like domain
分子名称: CASP8 and FADD-like apoptosis regulator
著者Jeffrey, P.D, Yu, J.W, Shi, Y.
登録日2009-04-10
公開日2009-04-28
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mechanism of procaspase-8 activation by c-FLIPL.
Proc.Natl.Acad.Sci.USA, 106, 2009
3H4M
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BU of 3h4m by Molmil
AAA ATPase domain of the proteasome- activating nucleotidase
分子名称: ADENOSINE-5'-DIPHOSPHATE, Proteasome-activating nucleotidase
著者Jeffrey, P, Zhang, F, Hu, M, Tian, G, Zhang, P, Finley, D, Shi, Y.
登録日2009-04-20
公開日2009-06-09
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.106 Å)
主引用文献Structural Insights into the Regulatory Particle of the Proteasome from Methanocaldococcus jannaschii.
Mol.Cell, 34, 2009
3H43
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BU of 3h43 by Molmil
N-terminal domain of the proteasome-activating nucleotidase of Methanocaldococcus jannaschii
分子名称: Proteasome-activating nucleotidase
著者Jeffrey, P.D, Zhang, F, Hu, M, Tian, G, Zhang, P, Finley, D, Shi, Y.
登録日2009-04-17
公開日2009-06-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Insights into the Regulatory Particle of the Proteasome from Methanocaldococcus jannaschii.
Mol.Cell, 34, 2009
3IA3
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BU of 3ia3 by Molmil
A cis-proline in alpha-hemoglobin stabilizing Protein directs the structural reorganization of alpha-hemoglobin
分子名称: Alpha-hemoglobin-stabilizing protein, Hemoglobin subunit alpha, PROTOPORPHYRIN IX CONTAINING FE
著者Feng, L, Jeffrey, P.D, Shi, Y.
登録日2009-07-13
公開日2009-07-28
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献A cis-proline in alpha-hemoglobin stabilizing protein directs the structural reorganization of alpha-hemoglobin.
J.Biol.Chem., 284, 2009
3J8H
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BU of 3j8h by Molmil
Structure of the rabbit ryanodine receptor RyR1 in complex with FKBP12 at 3.8 Angstrom resolution
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1A, Ryanodine receptor 1, ZINC ION
著者Yan, Z, Bai, X, Yan, C, Wu, J, Scheres, S.H.W, Shi, Y, Yan, N.
登録日2014-10-26
公開日2014-12-10
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution.
Nature, 517, 2015
3K7W
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BU of 3k7w by Molmil
Protein phosphatase 2A core complex bound to dinophysistoxin-2
分子名称: (2R)-2-hydroxy-3-[(2S,5R,6R,8S)-5-hydroxy-8-{(1R,2E)-3-[(2R,4a'R,5R,6'S,8'R,8a'S)-8'-hydroxy-6'-{(1S,3S)-1-hydroxy-3-[( 2S,6R,11S)-11-methyl-1,7-dioxaspiro[5.5]undec-2-yl]butyl}-7'-methylideneoctahydro-3H,3'H-spiro[furan-2,2'-pyrano[3,2-b]p yran]-5-yl]-1-methylprop-2-en-1-yl}-10-methyl-1,7-dioxaspiro[5.5]undec-10-en-2-yl]-2-methylpropanoic acid, MANGANESE (II) ION, SULFATE ION, ...
著者Jeffrey, P.D, Huhn, J, Shi, Y.
登録日2009-10-13
公開日2009-11-03
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.96 Å)
主引用文献A structural basis for the reduced toxicity of dinophysistoxin-2.
Chem.Res.Toxicol., 22, 2009
3JB9
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BU of 3jb9 by Molmil
Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution
分子名称: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Yan, C, Hang, J, Wan, R, Huang, M, Wong, C, Shi, Y.
登録日2015-08-09
公開日2015-09-23
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structure of a yeast spliceosome at 3.6-angstrom resolution
Science, 349, 2015
3K7V
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BU of 3k7v by Molmil
Protein phosphatase 2A core complex bound to dinophysistoxin-1
分子名称: (2R)-3-[(2S,5R,6R,8S)-8-{(1R,2E)-3-[(2R,4a'R,5R,6'S,8'R,8a'S)-6'-{(1S,3S)-3-[(2S,3R,6R,11R)-3,11-dimethyl-1,7-dioxaspiro[5.5]undec-2-yl]-1-hydroxybutyl}-8'-hydroxy-7'-methylideneoctahydro-3H,3'H-spiro[furan-2,2'-pyrano[3,2-b]pyran]-5-yl]-1-methylprop-2-en-1-yl}-5-hydroxy-10-methyl-1,7-dioxaspiro[5.5]undec-10-en-2-yl]-2-hydroxy-2-methylpropanoic acid, MANGANESE (II) ION, SULFATE ION, ...
著者Jeffrey, P.D, Huhn, J, Shi, Y.
登録日2009-10-13
公開日2009-11-03
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献A structural basis for the reduced toxicity of dinophysistoxin-2.
Chem.Res.Toxicol., 22, 2009
3JCM
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BU of 3jcm by Molmil
Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP
分子名称: 13 kDa ribonucleoprotein-associated protein, GUANOSINE-5'-TRIPHOSPHATE, N,N,7-trimethylguanosine 5'-(trihydrogen diphosphate), ...
著者Wan, R, Yan, C, Bai, R, Wang, L, Huang, M, Wong, C.C, Shi, Y.
登録日2015-12-23
公開日2016-02-24
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献The 3.8 angstrom structure of the U4/U6.U5 tri-snRNP: Insights into spliceosome assembly and catalysis
Science, 351, 2016
3H4P
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BU of 3h4p by Molmil
Proteasome 20S core particle from Methanocaldococcus jannaschii
分子名称: Proteasome subunit alpha, Proteasome subunit beta
著者Jeffrey, P.D, Zhang, F, Hu, M, Tian, G, Zhang, P, Finley, D, Shi, Y.
登録日2009-04-20
公開日2009-06-09
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (4.1 Å)
主引用文献Structural Insights into the Regulatory Particle of the Proteasome from Methanocaldococcus jannaschii.
Mol.Cell, 34, 2009
8GVB
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BU of 8gvb by Molmil
The complex between public TCR TD08 and HLA-A24 bound to HIV-1 Nef138-8 peptide
分子名称: 8-mer peptide from Protein Nef, Beta-2-microglobulin, MHC class I antigen, ...
著者Gao, G.F, Shi, Y, Ma, K, Chai, Y, Guan, J, Qi, J, Tan, S, Dong, T, Iwamoto, A, Kawana-Tachikawa, A.
登録日2022-09-14
公開日2022-10-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Molecular Basis for the Recognition of HIV Nef138-8 Epitope by a Pair of Human Public T Cell Receptors.
J Immunol., 209, 2022
1K99
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BU of 1k99 by Molmil
Solution Structure of the first HMG box in human Upstream binding factor
分子名称: Upstream binding factor 1
著者Xu, Y, Yang, W, Wu, J, Shi, Y.
登録日2001-10-28
公開日2001-11-14
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the first HMG box domain in human upstream binding factor.
Biochemistry, 41, 2002
1FEW
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BU of 1few by Molmil
CRYSTAL STRUCTURE OF SMAC/DIABLO
分子名称: SECOND MITOCHONDRIA-DERIVED ACTIVATOR OF CASPASES
著者Chai, J, Shi, Y.
登録日2000-07-23
公開日2000-09-13
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural and biochemical basis of apoptotic activation by Smac/DIABLO.
Nature, 406, 2000
8I0V
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BU of 8i0v by Molmil
The cryo-EM structure of human post-Bact complex
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, Cell division cycle 5-like protein, Crooked neck-like protein 1, ...
著者Zhan, X, Lu, Y, Shi, Y.
登録日2023-01-11
公開日2024-07-31
最終更新日2024-08-07
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Molecular basis for the activation of human spliceosome.
Nat Commun, 15, 2024
8I0P
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BU of 8i0p by Molmil
The cryo-EM structure of human pre-Bact complex
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, BUD13 homolog, Cell division cycle 5-like protein, ...
著者Zhan, X, Lu, Y, Shi, Y.
登録日2023-01-11
公開日2024-07-31
最終更新日2024-08-07
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Molecular basis for the activation of human spliceosome.
Nat Commun, 15, 2024

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