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5CB7
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BU of 5cb7 by Molmil
Crystallographic structure of human rotavirus K8 VP8* in complex with A-type HBGA
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, CHLORIDE ION, GLYCEROL, ...
著者Yu, X, Blanchard, H.
登録日2015-06-30
公開日2016-06-08
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Substantial Receptor-induced Structural Rearrangement of Rotavirus VP8*: Potential Implications for Cross-Species Infection.
Chembiochem, 16, 2015
5CA6
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BU of 5ca6 by Molmil
Crystallographic structure of apo porcine rotavirus TFR-41 VP8*
分子名称: FORMIC ACID, GLYCEROL, PALMITIC ACID, ...
著者Yu, X, Blanchard, H.
登録日2015-06-29
公開日2016-06-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Substantial Receptor-induced Structural Rearrangement of Rotavirus VP8*: Potential Implications for Cross-Species Infection.
Chembiochem, 16, 2015
5F3O
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BU of 5f3o by Molmil
Crystal structure of EhRNaseIII229 from Entamoeba histolytica complexed with Mn2+
分子名称: MANGANESE (II) ION, Putative uncharacterized protein, SULFATE ION
著者Yu, X, Gan, J.H, Ma, J.B.
登録日2015-12-03
公開日2016-12-28
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural and functional study of a noncanonical Dicer protein in Entamoeba histolytica
To Be Published
5F3Q
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BU of 5f3q by Molmil
Crystal structure of a noncanonical Dicer protein from Entamoeba histolytica
分子名称: Putative uncharacterized protein, SULFATE ION
著者Yu, X, Gan, J.H, Ma, J.B.
登録日2015-12-03
公開日2016-12-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and functional study of a noncanonical Dicer protein in Entamoeba histolytica
To Be Published
5F3P
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BU of 5f3p by Molmil
Crystal structure of a noncanonical Dicer protein from Entamoeba histolytica
分子名称: Putative uncharacterized protein, SULFATE ION
著者Yu, X, Gan, J.H, Ma, J.B.
登録日2015-12-03
公開日2017-02-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.904 Å)
主引用文献Structural and functional study of a noncanonical Dicer protein in Entamoeba histolytica
To Be Published
6J7O
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BU of 6j7o by Molmil
Crystal structure of toxin TglT (unusual type guanylyltransferase-like toxin, Rv1045) mutant E146Q from Mycobacterium tuberculosis
分子名称: MAGNESIUM ION, guanylyltransferase-like toxin
著者Yu, X, Gao, X, Zhu, K, Wojdyla, J.A, Wang, M, Cui, S.
登録日2019-01-18
公開日2020-05-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
6J7T
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BU of 6j7t by Molmil
Crystal structure of toxin TglT (unusual type guanylyltransferase-like toxin, Rv1045) mutant D82A from Mycobacterium tuberculosis
分子名称: GLYCEROL, MAGNESIUM ION, guanylyltransferase-like toxin
著者Yu, X, Gao, X, Zhu, K, Wojdyla, J.A, Wang, M, Cui, S.
登録日2019-01-18
公開日2020-05-13
最終更新日2020-05-20
実験手法X-RAY DIFFRACTION (1.903 Å)
主引用文献Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
6J7R
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BU of 6j7r by Molmil
Crystal structure of toxin TglT (unusual type guanylyltransferase-like toxin, Rv1045) mutant S78A co-expressed with TakA from Mycobacterium tuberculosis
分子名称: MAGNESIUM ION, guanylyltransferase-like toxin
著者Yu, X, Gao, X, Zhu, K, Wojdyla, J.A, Wang, M, Cui, S.
登録日2019-01-18
公開日2020-05-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.299 Å)
主引用文献Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
6J7N
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BU of 6j7n by Molmil
Crystal structure of toxin TglT (unusual type guanylyltransferase-like toxin, Rv1045) mutant D82A co-expressed with TakA from Mycobacterium tuberculosis
分子名称: MAGNESIUM ION, guanylyltransferase-like toxin
著者Yu, X, Gao, X, Zhu, K, Wojdyla, J.A, Wang, M, Cui, S.
登録日2019-01-18
公開日2020-05-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.294 Å)
主引用文献Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
6J7S
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BU of 6j7s by Molmil
Crystal structure of toxin TglT (unusual type guanylyltransferase-like toxin, Rv1045) wild type protein from Mycobacterium tuberculosis
分子名称: MAGNESIUM ION, guanylyltransferase-like toxin
著者Yu, X, Gao, X, Zhu, K, Wojdyla, J.A, Wang, M, Cui, S.
登録日2019-01-18
公開日2020-05-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.102 Å)
主引用文献Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
6J7P
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BU of 6j7p by Molmil
Crystal structure of toxin TglT (unusual type guanylyltransferase-like toxin, Rv1045) mutant E146Q co-expressed with TakA from Mycobacterium tuberculosis
分子名称: MAGNESIUM ION, guanylyltransferase-like toxin
著者Yu, X, Gao, X, Zhu, K, Wojdyla, J.A, Wang, M, Cui, S.
登録日2019-01-18
公開日2020-05-13
最終更新日2020-05-20
実験手法X-RAY DIFFRACTION (2.629 Å)
主引用文献Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
6J7Q
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BU of 6j7q by Molmil
Crystal structure of toxin TglT (unusual type guanylyltransferase-like toxin, Rv1045) mutant S78A from Mycobacterium tuberculosis
分子名称: CALCIUM ION, MAGNESIUM ION, guanylyltransferase-like toxin
著者Yu, X, Gao, X, Zhu, K, Wojdyla, J.A, Wang, M, Cui, S.
登録日2019-01-18
公開日2020-05-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
5VKU
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BU of 5vku by Molmil
An atomic structure of the human cytomegalovirus (HCMV) capsid with its securing layer of pp150 tegument protein
分子名称: Major capsid protein, Small capsomere-interacting protein, Tegument protein pp150, ...
著者Yu, X, Jih, J, Jiang, J, Zhou, H.
登録日2017-04-24
公開日2017-06-28
最終更新日2019-11-27
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Atomic structure of the human cytomegalovirus capsid with its securing tegument layer of pp150.
Science, 356, 2017
8DPL
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BU of 8dpl by Molmil
Structure of EBOV GP lacking the mucin-like domain with 2.1.1D5 scFv and 6D6 scFv bound
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2.1.1D5 heavy chain variable domain, 2.1.1D5 light chain variable domain, ...
著者Yu, X, Saphire, E.O.
登録日2022-07-15
公開日2023-07-19
最終更新日2023-11-22
実験手法ELECTRON MICROSCOPY (2.53 Å)
主引用文献The evolution and determinants of neutralization of potent head-binding antibodies against Ebola virus.
Cell Rep, 42, 2023
8DPM
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BU of 8dpm by Molmil
Structure of EBOV GP lacking the mucin-like domain with 9.20.1A2 Fab and 6D6 scFv bound
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody 6D6 scFv, Antibody 9.20.1A2 Fab heavy chain, ...
著者Yu, X, Saphire, E.O.
登録日2022-07-15
公開日2023-07-19
最終更新日2023-11-22
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献The evolution and determinants of neutralization of potent head-binding antibodies against Ebola virus.
Cell Rep, 42, 2023
8FU8
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BU of 8fu8 by Molmil
Structure of Covid Spike variant deltaN135 with one erect RBD
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Yu, X, Juraszek, J, Rutten, L, Bakkers, M.J.G, Blokland, S, Van den Broek, N.J.F, Verwilligen, A.Y.W, Abeywickrema, P, Vingerhoets, J, Neefs, J, Bakhash, S.A.M, Roychoudhury, P, Greninger, A, Sharma, S, Langedijk, J.P.M.
登録日2023-01-16
公開日2023-04-05
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3.08 Å)
主引用文献Convergence of immune escape strategies highlights plasticity of SARS-CoV-2 spike.
Plos Pathog., 19, 2023
8FU9
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BU of 8fu9 by Molmil
Structure of Covid Spike variant deltaN25 with one erect RBD
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Yu, X, Juraszek, J, Rutten, L, Bakkers, M.J.G, Blokland, S, Van den Broek, N.J.F, Verwilligen, A.Y.W, Abeywickrema, P, Vingerhoets, J, Neefs, J, Bakhash, S.A.M, Roychoudhury, P, Greninger, A, Sharma, S, Langedijk, J.P.M.
登録日2023-01-16
公開日2023-04-05
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3.52 Å)
主引用文献Convergence of immune escape strategies highlights plasticity of SARS-CoV-2 spike.
Plos Pathog., 19, 2023
8FU3
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BU of 8fu3 by Molmil
Structure Of Respiratory Syncytial Virus Polymerase with Novel Non-Nucleoside Inhibitor
分子名称: 8-methoxy-3-methyl-N-{(2S)-3,3,3-trifluoro-2-[5-fluoro-6-(4-fluorophenyl)-4-(2-hydroxypropan-2-yl)pyridin-2-yl]-2-hydroxypropyl}cinnoline-6-carboxamide, Phosphoprotein, RNA-directed RNA polymerase L
著者Yu, X, Abeywickrema, P, Bonneux, B, Behera, I, Jacoby, E, Fung, A, Adhikary, S, Bhaumik, A, Carbajo, R.J, Bruyn, S.D, Miller, R, Patrick, A, Pham, Q, Piassek, M, Verheyen, N, Shareef, A, Sutto-Ortiz, P, Ysebaert, N, Vlijmen, H.V, Jonckers, T.H.M, Herschke, F, McLellan, J.S, Decroly, E, Fearns, R, Grosse, S, Roymans, D, Sharma, S, Rigaux, P, Jin, Z.
登録日2023-01-16
公開日2023-11-01
実験手法ELECTRON MICROSCOPY (2.88 Å)
主引用文献Structural and mechanistic insights into the inhibition of respiratory syncytial virus polymerase by a non-nucleoside inhibitor.
Commun Biol, 6, 2023
8FU7
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BU of 8fu7 by Molmil
Structure of Covid Spike variant deltaN135 in fully closed form
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Yu, X, Juraszek, J, Rutten, L, Bakkers, M.J.G, Blokland, S, Van den Broek, N.J.F, Verwilligen, A.Y.W, Abeywickrema, P, Vingerhoets, J, Neefs, J, Bakhash, S.A.M, Roychoudhury, P, Greninger, A, Sharma, S, Langedijk, J.P.M.
登録日2023-01-16
公開日2023-04-05
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3.21 Å)
主引用文献Convergence of immune escape strategies highlights plasticity of SARS-CoV-2 spike.
Plos Pathog., 19, 2023
8I0K
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BU of 8i0k by Molmil
Cryo-electron microscopic structure of the 2-oxoglutarate dehydrogenase(E1) with TCAIM complex
分子名称: 2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate, 2-oxoglutarate dehydrogenase complex component E1, CALCIUM ION, ...
著者Yu, X, Yang, W, Zhong, Y.H, Ma, X.M, Gao, Y.Z.
登録日2023-01-11
公開日2024-05-01
実験手法ELECTRON MICROSCOPY (2.86 Å)
主引用文献Cryo-electron microscopic structure of the 2-oxoglutarate dehydrogenase (E1) with TCAIM complex
To Be Published
7CWY
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BU of 7cwy by Molmil
Crystal structure of a tyrosine decarboxylase from Enterococcus faecalis in complex with the cofactor PLP
分子名称: Decarboxylase
著者Yu, X, Gong, M, Huang, J, Liu, W, Chen, C, Guo, R.
登録日2020-09-01
公開日2021-09-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Crystal structure of a tyrosine decarboxylase from Enterococcus faecalis in complex with the cofactor PLP
to be published
7CX0
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BU of 7cx0 by Molmil
Crystal structure of a tyrosine decarboxylase from Enterococcus faecalis in complex with the cofactor PLP and inhibitor carbidopa
分子名称: CARBIDOPA, Decarboxylase, PYRIDOXAL-5'-PHOSPHATE
著者Yu, X, Gong, M, Huang, J, Liu, W, Chen, C, Guo, R.
登録日2020-09-01
公開日2021-09-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献Crystal structure of a tyrosine decarboxylase from Enterococcus faecalis in complex with the cofactor PLP and inhibitor carbidopa
to be published
7CWZ
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BU of 7cwz by Molmil
Crystal structure of a tyrosine decarboxylase from Enterococcus faecalis K392A mutant in complex with the cofactor PLP and L-dopa
分子名称: Decarboxylase, L-DOPAMINE, MAGNESIUM ION, ...
著者Yu, X, Gong, M, Huang, J, Liu, W, Chen, C, Guo, R.
登録日2020-09-01
公開日2021-09-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.97 Å)
主引用文献Crystal structure of a tyrosine decarboxylase from Enterococcus faecalis K392A mutant in complex with the cofactor PLP and L-dopa
to be published
7CX1
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BU of 7cx1 by Molmil
Crystal structure of a tyrosine decarboxylase from Enterococcus faecalis in complex with the cofactor PLP and inhibitor methyl-tyrosine
分子名称: 4-[(2R)-2-(methylamino)propyl]phenol, Decarboxylase
著者Yu, X, Gong, M, Huang, J, Liu, W, Chen, C, Guo, R.
登録日2020-09-01
公開日2021-09-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献Crystal structure of a tyrosine decarboxylase from Enterococcus faecalis in complex with the cofactor PLP and inhibitor methyl-tyrosine
to be published
7CWX
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BU of 7cwx by Molmil
Crystal structure of a tyrosine decarboxylase from Enterococcus faecalis
分子名称: DI(HYDROXYETHYL)ETHER, Decarboxylase, GLYCEROL
著者Yu, X, Gong, M, Huang, J, Liu, W, Chen, C, Guo, R.
登録日2020-09-01
公開日2021-09-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of a tyrosine decarboxylase from Enterococcus faecalis
to be published

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件を2024-06-12に公開中

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