Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4R1Z
DownloadVisualize
BU of 4r1z by Molmil
Zebra fish cytochrome P450 17A1 with Abiraterone
分子名称: Abiraterone, Cyp17a1 protein, PROTOPORPHYRIN IX CONTAINING FE
著者Pallan, P.S, Egli, M.
登録日2014-08-08
公開日2014-12-31
最終更新日2015-03-04
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural and Kinetic Basis of Steroid 17 alpha, 20-Lyase Activity in Teleost Fish Cytochrome P450 17A1 and Its Absence in Cytochrome P450 17A2.
J.Biol.Chem., 290, 2015
2A43
DownloadVisualize
BU of 2a43 by Molmil
Crystal Structure of a Luteoviral RNA Pseudoknot and Model for a Minimal Ribosomal Frameshifting Motif
分子名称: MAGNESIUM ION, RNA Pseudoknot
著者Pallan, P.S, Marshall, W.S, Harp, J, Jewett III, F.C, Wawrzak, Z, Brown II, B.A, Rich, A, Egli, M.
登録日2005-06-27
公開日2005-09-27
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Crystal Structure of a Luteoviral RNA Pseudoknot and Model for a Minimal Ribosomal Frameshifting Motif
Biochemistry, 44, 2005
5W20
DownloadVisualize
BU of 5w20 by Molmil
Crystal Structure of inosine-substituted duplex DNA
分子名称: DNA (5'-D(*CP*CP*AP*IP*IP*CP*CP*TP*GP*G)-3'), MAGNESIUM ION
著者Pallan, P.S, Egli, M.
登録日2017-06-05
公開日2017-08-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography.
J. Biomol. Struct. Dyn., 36, 2018
5W1Z
DownloadVisualize
BU of 5w1z by Molmil
Crystal Structure of inosine-substituted decamer duplex DNA (I4)
分子名称: DNA (5'-D(*CP*CP*AP*IP*IP*CP*CP*(BRU)P*IP*I)-3'), MAGNESIUM ION, SODIUM ION
著者Pallan, P.S, Egli, M.
登録日2017-06-05
公開日2017-08-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography.
J. Biomol. Struct. Dyn., 36, 2018
3I8D
DownloadVisualize
BU of 3i8d by Molmil
The Pairing Geometry of the Hydrophobic Thymine Analog 2,4-Difluorotoluene in Duplex DNA as Analyzed by X-ray Crystallography
分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*(DFT)P*CP*GP*CP*G)-3', GLYCEROL, Ribonuclease H
著者Egli, M, Pallan, P.S.
登録日2009-07-09
公開日2009-09-01
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Pairing geometry of the hydrophobic thymine analogue 2,4-difluorotoluene in duplex DNA as analyzed by X-ray crystallography.
J.Am.Chem.Soc., 131, 2009
3EY3
DownloadVisualize
BU of 3ey3 by Molmil
A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 5'-D(*CP*GP*CP*GP*AP*AP*(USM)P*(USM)P*CP*GP*CP*G)-3', STRONTIUM ION
著者Egli, M, Pallan, P.S.
登録日2008-10-17
公開日2009-04-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献A conformational transition in the structure of a 2'-thiomethyl-modified DNA visualized at high resolution.
Chem.Commun.(Camb.), 15, 2009
3EY1
DownloadVisualize
BU of 3ey1 by Molmil
A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution
分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*(USM)P*(USM)P*CP*GP*CP*G)-3', GLYCEROL, Ribonuclease H
著者Egli, M, Pallan, P.S.
登録日2008-10-17
公開日2009-04-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A conformational transition in the structure of a 2'-thiomethyl-modified DNA visualized at high resolution.
Chem.Commun.(Camb.), 15, 2009
3EY2
DownloadVisualize
BU of 3ey2 by Molmil
A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution
分子名称: 5'-D(*GP*CP*GP*TP*AP*(USM)P*AP*CP*GP*C)-3', N-methylpropane-1,3-diamine
著者Egli, M, Pallan, P.S.
登録日2008-10-17
公開日2009-04-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献A conformational transition in the structure of a 2'-thiomethyl-modified DNA visualized at high resolution.
Chem.Commun.(Camb.), 15, 2009
7JJF
DownloadVisualize
BU of 7jjf by Molmil
Sarcin-ricin loop with modified residue.
分子名称: MAGNESIUM ION, RNA/DNA (27-mer)
著者Harp, J.M, Pallan, P.S, Egli, M.
登録日2020-07-25
公開日2020-12-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Incorporating a Thiophosphate Modification into a Common RNA Tetraloop Motif Causes an Unanticipated Stability Boost.
Biochemistry, 59, 2020
4F2Y
DownloadVisualize
BU of 4f2y by Molmil
Structure of 3'-Fluoro Cyclohexenyl Nucleic Acid Decamer
分子名称: 5'-D(*GP*CP*GP*TP*AP*(XTF)P*AP*CP*GP*C)-3', MAGNESIUM ION
著者Pallan, P.S, Egli, M.
登録日2012-05-08
公開日2012-05-30
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Synthesis and Antisense Properties of Fluoro Cyclohexenyl Nucleic Acid (F-CeNA), a Nuclease Stable Mimic of 2'-Fluoro RNA.
J.Org.Chem., 77, 2012
4F2X
DownloadVisualize
BU of 4f2x by Molmil
Structure of 3'-Fluoro Cyclohexenyl Nucleic Acid Heptamer
分子名称: 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*(XTF)P*GP*CP*G)-3', COBALT (III) ION, ...
著者Pallan, P.S, Egli, M.
登録日2012-05-08
公開日2012-05-30
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Synthesis and Antisense Properties of Fluoro Cyclohexenyl Nucleic Acid (F-CeNA), a Nuclease Stable Mimic of 2'-Fluoro RNA.
J.Org.Chem., 77, 2012
4DKZ
DownloadVisualize
BU of 4dkz by Molmil
Hairpin structure of a DNA dodecamer containing North-methanocarba-2'-deoxythymidine
分子名称: Synthetic DNA dodecamer containg North-methanocarba-2'-deoxythymidine (N-MCdT)
著者Egli, M, Pallan, P.S.
登録日2012-02-05
公開日2012-03-28
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Conformationally Constrained N-Methanocarba-dT Analogue Adopts an Unexpected C4'-exo Sugar Pucker in the Structure of a DNA Hairpin.
Biochemistry, 51, 2012
5DO4
DownloadVisualize
BU of 5do4 by Molmil
Thrombin-RNA aptamer complex
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Pallan, P.S, Egli, M.
登録日2015-09-10
公開日2016-09-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.859 Å)
主引用文献Evoking picomolar binding in RNA by a single phosphorodithioate linkage.
Nucleic Acids Res., 44, 2016
7U38
DownloadVisualize
BU of 7u38 by Molmil
Pixantrone tethered DNA duplex
分子名称: 1,2-ETHANEDIOL, Pixantrone AP conjugate-modified DNA
著者Pallan, P.S, Egli, M.
登録日2022-02-26
公開日2023-03-15
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Structural Characterization of a Covalent Conjugate between Pixantrone and an Abasic Site in DNA
To Be Published
8CU0
DownloadVisualize
BU of 8cu0 by Molmil
12-mer DNA structure of ExBIM bound to RNaseH -modified DDD
分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*(OWR)P*CP*CP*G)-3'), GLYCEROL, ...
著者Pallan, P.S, Egli, M.
登録日2022-05-16
公開日2022-08-31
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Conformation and Pairing Properties of an O 6 -Methyl-2'-deoxyguanosine-Directed Benzimidazole Nucleoside Analog in Duplex DNA.
Chem.Res.Toxicol., 35, 2022
8CTY
DownloadVisualize
BU of 8cty by Molmil
12-mer DNA structure of ExBIM bound to RNase-H
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
著者Pallan, P.S, Egli, M.
登録日2022-05-16
公開日2022-08-31
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Conformation and Pairing Properties of an O 6 -Methyl-2'-deoxyguanosine-Directed Benzimidazole Nucleoside Analog in Duplex DNA.
Chem.Res.Toxicol., 35, 2022
8CTZ
DownloadVisualize
BU of 8ctz by Molmil
12-mer DNA structure of ExBIM & O6Me-G bound to RNase-H
分子名称: 1,2-ETHANEDIOL, ACETATE ION, DNA (5'-D(*CP*GP*CP*(6OG)P*AP*AP*TP*TP*(OWR)P*GP*CP*G)-3'), ...
著者Pallan, P.S, Egli, M.
登録日2022-05-16
公開日2022-08-31
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Conformation and Pairing Properties of an O 6 -Methyl-2'-deoxyguanosine-Directed Benzimidazole Nucleoside Analog in Duplex DNA.
Chem.Res.Toxicol., 35, 2022
6XHC
DownloadVisualize
BU of 6xhc by Molmil
Structure of glycinyl 5'-O-adenosine phosphoramidate
分子名称: 2-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]amino]ethanoic acid, Ribonuclease pancreatic
著者Pallan, P.S, Egli, M.
登録日2020-06-18
公開日2020-12-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The Enzyme-Free Release of Nucleotides from Phosphoramidates Depends Strongly on the Amino Acid.
Angew.Chem.Int.Ed.Engl., 59, 2020
6XHE
DownloadVisualize
BU of 6xhe by Molmil
Structure of beta-prolinyl 5'-O-adenosine phosphoramidate
分子名称: 5'-O-[(S)-[(3S)-3-carboxypyrrolidin-1-yl](hydroxy)phosphoryl]adenosine, ADENOSINE MONOPHOSPHATE, Ribonuclease pancreatic
著者Pallan, P.S, Egli, M.
登録日2020-06-18
公開日2021-03-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献The Enzyme-Free Release of Nucleotides from Phosphoramidates Depends Strongly on the Amino Acid.
Angew.Chem.Int.Ed.Engl., 59, 2020
6XHD
DownloadVisualize
BU of 6xhd by Molmil
Structure of Prolinyl-5'-O-adenosine phosphoramidate
分子名称: (2~{S})-1-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]pyrrolidine-2-carboxylic acid, (4S)-2-METHYL-2,4-PENTANEDIOL, POTASSIUM ION, ...
著者Pallan, P.S, Egli, M.
登録日2020-06-18
公開日2021-03-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献The Enzyme-Free Release of Nucleotides from Phosphoramidates Depends Strongly on the Amino Acid.
Angew.Chem.Int.Ed.Engl., 59, 2020
6XHF
DownloadVisualize
BU of 6xhf by Molmil
Structure of Phenylalanyl-5'-O-adenosine phosphoramidate
分子名称: (2~{S})-2-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]amino]-3-phenyl-propanoic acid, CHLORIDE ION, Ribonuclease pancreatic
著者Pallan, P.S, Egli, M.
登録日2020-06-18
公開日2021-03-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献The Enzyme-Free Release of Nucleotides from Phosphoramidates Depends Strongly on the Amino Acid.
Angew.Chem.Int.Ed.Engl., 59, 2020
5VBU
DownloadVisualize
BU of 5vbu by Molmil
Crystal Structure of Human Cytochrome P450 21A2 Hydroxyprogesterone Complex
分子名称: (9beta)-17-hydroxypregn-4-ene-3,20-dione, Cytochrome P450 21-hydroxylase, PROTOPORPHYRIN IX CONTAINING FE
著者Pallan, P.S, Egli, M.
登録日2017-03-30
公開日2017-05-31
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (3.31 Å)
主引用文献Functional analysis of human cytochrome P450 21A2 variants involved in congenital adrenal hyperplasia.
J. Biol. Chem., 292, 2017
5VAJ
DownloadVisualize
BU of 5vaj by Molmil
BhRNase H - amide-RNA/DNA complex
分子名称: ACETATE ION, DNA (5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3'), GLYCEROL, ...
著者Pallan, P.S, Egli, M.
登録日2017-03-27
公開日2017-09-13
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Amide linkages mimic phosphates in RNA interactions with proteins and are well tolerated in the guide strand of short interfering RNAs.
Nucleic Acids Res., 45, 2017
5V1K
DownloadVisualize
BU of 5v1k by Molmil
Structure of R-GNA dodecamer
分子名称: RNA (5'-R(*CP*GP*CP*GP*AP*AP*(5BU)P*(8RJ)P*AP*GP*CP*G)-3')
著者Pallan, P.S, Egli, M.
登録日2017-03-02
公開日2017-06-21
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Chirality Dependent Potency Enhancement and Structural Impact of Glycol Nucleic Acid Modification on siRNA.
J. Am. Chem. Soc., 2017
5V1L
DownloadVisualize
BU of 5v1l by Molmil
Structure of S-GNA dodecamer
分子名称: RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*(ZTH)P*AP*GP*CP*G)-3'), SPERMINE, STRONTIUM ION
著者Pallan, P.S, Egli, M.
登録日2017-03-02
公開日2017-06-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Chirality Dependent Potency Enhancement and Structural Impact of Glycol Nucleic Acid Modification on siRNA.
J. Am. Chem. Soc., 139, 2017

226262

件を2024-10-16に公開中

PDB statisticsPDBj update infoContact PDBjnumon