3VLY
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![BU of 3vly by Molmil](/molmil-images/mine/3vly) | Assimilatory nitrite reductase (Nii3) - N226K mutant - SO3 partial complex from tobacco leaf | 分子名称: | CHLORIDE ION, IRON/SULFUR CLUSTER, Nitrite reductase, ... | 著者 | Nakano, S, Takahashi, M, Sakamoto, A, Morikawa, H, Katayanagi, K. | 登録日 | 2011-12-05 | 公開日 | 2012-09-26 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity Chem.Biodivers., 9, 2012
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3VM0
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![BU of 3vm0 by Molmil](/molmil-images/mine/3vm0) | Assimilatory nitrite reductase (Nii3) - N226K mutant - NO2 complex from tobacco leaf | 分子名称: | CHLORIDE ION, IRON/SULFUR CLUSTER, NITRITE ION, ... | 著者 | Nakano, S, Takahashi, M, Sakamoto, A, Morikawa, H, Katayanagi, K. | 登録日 | 2011-12-05 | 公開日 | 2012-09-26 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.695 Å) | 主引用文献 | X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity Chem.Biodivers., 9, 2012
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3VM1
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![BU of 3vm1 by Molmil](/molmil-images/mine/3vm1) | assimilatory nitrite reductase (Nii3) - N226K mutant - HCO3 complex from tobacco leaf | 分子名称: | BICARBONATE ION, CHLORIDE ION, IRON/SULFUR CLUSTER, ... | 著者 | Nakano, S, Takahashi, M, Sakamoto, A, Morikawa, H, Katayanagi, K. | 登録日 | 2011-12-05 | 公開日 | 2012-09-26 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity Chem.Biodivers., 9, 2012
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3VKP
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![BU of 3vkp by Molmil](/molmil-images/mine/3vkp) | Assimilatory nitrite reductase (Nii3) - NO2 complex from tobbaco leaf analysed with low X-ray dose | 分子名称: | CHLORIDE ION, IRON/SULFUR CLUSTER, NITRITE ION, ... | 著者 | Nakano, S, Takahashi, M, Sakamoto, A, Morikawa, H, Katayanagi, K. | 登録日 | 2011-11-20 | 公開日 | 2012-04-25 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | The reductive reaction mechanism of tobacco nitrite reductase derived from a combination of crystal structures and ultraviolet-visible microspectroscopy Proteins, 80, 2012
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3WWO
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![BU of 3wwo by Molmil](/molmil-images/mine/3wwo) | S-selective hydroxynitrile lyase from Baliospermum montanum (apo1) | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, (S)-hydroxynitrile lyase, CALCIUM ION | 著者 | Nakano, S, Dadashipour, M, Asano, Y. | 登録日 | 2014-06-23 | 公開日 | 2014-10-22 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | 主引用文献 | Structural and functional analysis of hydroxynitrile lyase from Baliospermum montanum with crystal structure, molecular dynamics and enzyme kinetics Biochim.Biophys.Acta, 1844, 2014
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3WWP
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![BU of 3wwp by Molmil](/molmil-images/mine/3wwp) | S-selective hydroxynitrile lyase from Baliospermum montanum (apo2) | 分子名称: | (S)-hydroxynitrile lyase, 1,2-ETHANEDIOL, CHLORIDE ION, ... | 著者 | Nakano, S, Dadashipour, M, Asano, Y. | 登録日 | 2014-06-23 | 公開日 | 2014-10-22 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Structural and functional analysis of hydroxynitrile lyase from Baliospermum montanum with crystal structure, molecular dynamics and enzyme kinetics Biochim.Biophys.Acta, 1844, 2014
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3VLX
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![BU of 3vlx by Molmil](/molmil-images/mine/3vlx) | Assimilatory nitrite reductase (Nii3) - N226K mutant - ligand free form from tobacco leaf | 分子名称: | CHLORIDE ION, IRON/SULFUR CLUSTER, Nitrite reductase, ... | 著者 | Nakano, S, Takahashi, M, Sakamoto, A, Morikawa, H, Katayanagi, K. | 登録日 | 2011-12-05 | 公開日 | 2012-09-26 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | 主引用文献 | X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity Chem.Biodivers., 9, 2012
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8JHE
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![BU of 8jhe by Molmil](/molmil-images/mine/8jhe) | Hyper-thermostable ancestral L-amino acid oxidase 2 (HTAncLAAO2) | 分子名称: | FLAVIN-ADENINE DINUCLEOTIDE, Hyper thermostable ancestral L-amino acid oxidase | 著者 | Kawamura, Y, Ishida, C, Miyata, R, Miyata, A, Hayashi, S, Fujinami, D, Ito, S, Nakano, S. | 登録日 | 2023-05-23 | 公開日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (2.201 Å) | 主引用文献 | Structural and functional analysis of hyper-thermostable ancestral L-amino acid oxidase that can convert Trp derivatives to D-forms by chemoenzymatic reaction. Commun Chem, 6, 2023
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6L96
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![BU of 6l96 by Molmil](/molmil-images/mine/6l96) | Structure of PPARalpha-LBD/pemafibrate/SRC1 peptide | 分子名称: | (2~{R})-2-[3-[[1,3-benzoxazol-2-yl-[3-(4-methoxyphenoxy)propyl]amino]methyl]phenoxy]butanoic acid, Peroxisome proliferator-activated receptor alpha, SRC1 coactivator peptide | 著者 | Kawasaki, M, Kambe, A, Yamamoto, Y, Arulmozhira, S, Ito, S, Nakagawa, Y, Tokiwa, H, Nakano, S, Shimano, H. | 登録日 | 2019-11-08 | 公開日 | 2020-01-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Elucidation of Molecular Mechanism of a Selective PPAR alpha Modulator, Pemafibrate, through Combinational Approaches of X-ray Crystallography, Thermodynamic Analysis, and First-Principle Calculations. Int J Mol Sci, 21, 2020
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8J82
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![BU of 8j82 by Molmil](/molmil-images/mine/8j82) | GaHNL-12gen (artificial S-hydroxynitrile lyase generated by GAOptimizer) | 分子名称: | S-hydroxynitrile lyase | 著者 | Ozawa, H, Unno, I, Sekine, R, Ito, S, Nakano, S. | 登録日 | 2023-04-29 | 公開日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.69 Å) | 主引用文献 | Development of evolutionary algorithm-based protein redesign method Cell Rep Phys Sci, 5, 2024
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6LB5
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![BU of 6lb5 by Molmil](/molmil-images/mine/6lb5) | Crystal structure of dimeric RXR-LBD complexed with full agonist NEt-3IB and TIF2 co-activator | 分子名称: | 6-[ethyl-[3-(2-methylpropoxy)-4-propan-2-yl-phenyl]amino]pyridine-3-carboxylic acid, Nuclear receptor coactivator 2, Retinoic acid receptor RXR-alpha | 著者 | Imai, D, Numoto, N, Nakano, S, Kakuta, H, Ito, N. | 登録日 | 2019-11-13 | 公開日 | 2020-11-18 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Crystal structure of dimeric RXR-LBD complexed with full agonist NEt-3IB and TIF2 co-activator To Be Published
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6L6K
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![BU of 6l6k by Molmil](/molmil-images/mine/6l6k) | Crystal structure of dimeric RXRalpha-LBD complexed with partial agonist CBt-PMN and SRC1 | 分子名称: | 1-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)benzotriazole-5-carboxylic acid, CALCIUM ION, Nuclear receptor coactivator 1, ... | 著者 | Shimizu, K, Numoto, N, Nakano, S, Makishima, M, Kakuta, H, Ito, N. | 登録日 | 2019-10-29 | 公開日 | 2020-11-04 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal structure of dimeric RXRalpha-LBD complexed with partial agonist CBt-PMN and SRC1 To Be Published
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6LB4
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![BU of 6lb4 by Molmil](/molmil-images/mine/6lb4) | Crystal structure of dimeric RXR-LBD complexed with NEt-3ME and TIF2 co-activator | 分子名称: | 1,2-ETHANEDIOL, 6-[ethyl-[3-(2-methoxyethoxy)-4-propan-2-yl-phenyl]amino]pyridine-3-carboxylic acid, Nuclear receptor coactivator 2, ... | 著者 | Imai, D, Numoto, N, Nakano, S, Kakuta, H, Ito, N. | 登録日 | 2019-11-13 | 公開日 | 2020-11-18 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Crystal structure of dimeric RXR-LBD complexed with NEt-3ME and TIF2 co-activator To Be Published
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6LB6
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![BU of 6lb6 by Molmil](/molmil-images/mine/6lb6) | Crystal structure of dimeric RXR-LBD complexed with partial agonist NEt-4IB and TIF2 co-activator | 分子名称: | 6-[ethyl-[4-(2-methylpropoxy)-3-propan-2-yl-phenyl]amino]pyridine-3-carboxylic acid, Nuclear receptor coactivator 2, Retinoic acid receptor RXR-alpha | 著者 | Imai, D, Numoto, N, Nakano, S, Kakuta, H, Ito, N. | 登録日 | 2019-11-13 | 公開日 | 2020-11-18 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Crystal structure of dimeric RXR-LBD complexed with partial agonist NEt-4IB and TIF2 co-activator To Be Published
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6JNO
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![BU of 6jno by Molmil](/molmil-images/mine/6jno) | RXRa structure complexed with CU-6PMN | 分子名称: | 7-oxidanyl-2-oxidanylidene-6-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)chromene-3-carboxylic acid, Retinoic acid receptor RXR-alpha | 著者 | Kawasaki, M, Nakano, S, Motoyama, T, Yamada, S, Watanabe, M, Takamura, Y, Fujihara, M, Tokiwa, H, Kakuta, H, Ito, S. | 登録日 | 2019-03-17 | 公開日 | 2019-11-20 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.65 Å) | 主引用文献 | Competitive Binding Assay with an Umbelliferone-Based Fluorescent Rexinoid for Retinoid X Receptor Ligand Screening. J.Med.Chem., 62, 2019
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6JNR
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![BU of 6jnr by Molmil](/molmil-images/mine/6jnr) | RXRa structure complexed with CU-6PMN and SRC1 peptide. | 分子名称: | 7-oxidanyl-2-oxidanylidene-6-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)chromene-3-carboxylic acid, HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN, Retinoic acid receptor RXR-alpha | 著者 | Kawasaki, M, Nakano, S, Motoyama, T, Yamada, S, Watanabe, M, Takamura, Y, Fujihara, M, Tokiwa, H, Kakuta, H, Ito, S. | 登録日 | 2019-03-18 | 公開日 | 2020-03-25 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | RXRa structure complexed with CU-6PMN and SRC1 peptide. To Be Published
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5ZQU
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![BU of 5zqu by Molmil](/molmil-images/mine/5zqu) | Crystal structure of tetrameric RXRalpha-LBD complexed with partial agonist CBt-PMN | 分子名称: | 1-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)benzotriazole-5-carboxylic acid, BROMIDE ION, Retinoic acid receptor RXR-alpha | 著者 | Miyashita, Y, Numoto, N, Arulmozhiraja, S, Nakano, S, Matsuo, N, Shimizu, K, Kakuta, H, Ito, S, Ikura, T, Ito, N, Tokiwa, H. | 登録日 | 2018-04-20 | 公開日 | 2019-02-27 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.60038781 Å) | 主引用文献 | Dual conformation of the ligand induces the partial agonistic activity of retinoid X receptor alpha (RXR alpha ). FEBS Lett., 593, 2019
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5Y1F
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![BU of 5y1f by Molmil](/molmil-images/mine/5y1f) | Monomeric L-threonine 3-dehydrogenase from metagenome database (NAD+ bound form) | 分子名称: | NAD dependent epimerase/dehydratase family, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S. | 登録日 | 2017-07-20 | 公開日 | 2017-11-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | 主引用文献 | Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase. Biochemistry, 56, 2017
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5Y1G
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![BU of 5y1g by Molmil](/molmil-images/mine/5y1g) | Monomeric L-threonine 3-dehydrogenase from metagenome database (AKB and NADH bound form) | 分子名称: | 2-AMINO-3-KETOBUTYRIC ACID, NAD dependent epimerase/dehydratase family, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S. | 登録日 | 2017-07-20 | 公開日 | 2017-11-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | 主引用文献 | Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase. Biochemistry, 56, 2017
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5Y1E
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![BU of 5y1e by Molmil](/molmil-images/mine/5y1e) | monomeric L-threonine 3-dehydrogenase from metagenome database (L-Ser and NAD+ bound form) | 分子名称: | NAD dependent epimerase/dehydratase family, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SERINE | 著者 | Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S. | 登録日 | 2017-07-20 | 公開日 | 2017-11-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase. Biochemistry, 56, 2017
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5Y1D
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![BU of 5y1d by Molmil](/molmil-images/mine/5y1d) | Monomeric L-threonine 3-dehydrogenase from metagenome database (apo form) | 分子名称: | NAD dependent epimerase/dehydratase family | 著者 | Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S. | 登録日 | 2017-07-20 | 公開日 | 2017-11-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase. Biochemistry, 56, 2017
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5Z09
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![BU of 5z09 by Molmil](/molmil-images/mine/5z09) | ST0452(Y97N)-UTP binding form | 分子名称: | Dual sugar-1-phosphate nucleotidylyltransferase, URIDINE 5'-TRIPHOSPHATE | 著者 | Honda, Y, Nakano, S, Ito, S, Dadashipour, M, Zhang, Z, Kawarabayasi, Y. | 登録日 | 2017-12-19 | 公開日 | 2018-10-31 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.91 Å) | 主引用文献 | Improvement of ST0452N-Acetylglucosamine-1-Phosphate Uridyltransferase Activity by the Cooperative Effect of Two Single Mutations Identified through Structure-Based Protein Engineering Appl. Environ. Microbiol., 84, 2018
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5Z0A
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![BU of 5z0a by Molmil](/molmil-images/mine/5z0a) | ST0452(Y97N)-GlcNAc binding form | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Dual sugar-1-phosphate nucleotidylyltransferase | 著者 | Honda, Y, Nakano, S, Ito, S, Dadashipour, M, Zhang, Z, Kawarabayasi, Y. | 登録日 | 2017-12-19 | 公開日 | 2018-10-31 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.09 Å) | 主引用文献 | Improvement of ST0452N-Acetylglucosamine-1-Phosphate Uridyltransferase Activity by the Cooperative Effect of Two Single Mutations Identified through Structure-Based Protein Engineering Appl. Environ. Microbiol., 84, 2018
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1Z3E
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![BU of 1z3e by Molmil](/molmil-images/mine/1z3e) | Crystal Structure of Spx in Complex with the C-terminal Domain of the RNA Polymerase Alpha Subunit | 分子名称: | DNA-directed RNA polymerase alpha chain, Regulatory protein spx, SULFATE ION | 著者 | Newberry, K.J, Nakano, S, Zuber, P, Brennan, R.G. | 登録日 | 2005-03-11 | 公開日 | 2005-10-11 | 最終更新日 | 2017-10-11 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Crystal structure of the Bacillus subtilis anti-alpha, global transcriptional regulator, Spx, in complex with the {alpha} C-terminal domain of RNA polymerase Proc.Natl.Acad.Sci.Usa, 102, 2005
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4YK7
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![BU of 4yk7 by Molmil](/molmil-images/mine/4yk7) | |