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6JUO
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BU of 6juo by Molmil
MsDpo4-DNA complex 4
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(P*CP*TP*GP*GP*GP*GP*TP*CP*CP*TP*AP*GP*G)-3'), DNA polymerase IV, ...
著者Nair, D.T, Johnson, M.K.
登録日2019-04-15
公開日2020-02-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUS
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BU of 6jus by Molmil
MsDpo4-DNA complex 6
分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (5'-D(*TP*CP*TP*GP*GP*GP*GP*TP*CP*CP*TP*AP*G)-3'), DNA polymerase IV, ...
著者Nair, D.T, Johnson, M.K.
登録日2019-04-15
公開日2020-02-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUL
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BU of 6jul by Molmil
MsDpo4-DNA complex 1
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(P*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA polymerase IV, ...
著者Nair, D.T, Johnson, M.K.
登録日2019-04-15
公開日2020-02-19
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUM
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BU of 6jum by Molmil
MsDpo4-DNA complex 2
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(P*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA polymerase IV, ...
著者Nair, D.T, Johnson, M.J.
登録日2019-04-15
公開日2020-02-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUN
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BU of 6jun by Molmil
MsDpo4-DNA complex 3
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(P*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA polymerase IV, ...
著者Nair, D.T, Johnson, M.K.
登録日2019-04-15
公開日2020-02-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUP
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BU of 6jup by Molmil
Mutant PolIV-DNA incoming nucleotide complex
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(P*CP*TP*GP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*CP*C)-3'), DNA (5'-D(P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
著者Nair, D.T, Johnson, M.K.
登録日2019-04-15
公開日2020-02-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUQ
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BU of 6juq by Molmil
mutant PolIV-DNA incoming nucleotide complex 2
分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (5'-D(P*CP*TP*GP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(P*GP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
著者Nair, D.T, Johnson, M.K.
登録日2019-04-15
公開日2020-02-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.74 Å)
主引用文献A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
4Q44
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BU of 4q44 by Molmil
Polymerase-Damaged DNA Complex
分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*TP*CP*TP*AP*(RDG)P*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA polymerase IV, ...
著者Nair, D.T, Kottur, J, Sharma, A.
登録日2014-04-13
公開日2015-05-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Unique structural features in DNA polymerase IV enable efficient bypass of the N2 adduct induced by the nitrofurazone antibiotic
Structure, 23, 2015
4DEZ
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BU of 4dez by Molmil
Structure of MsDpo4
分子名称: DNA polymerase IV 1
著者Nair, D.T, Sharma, A.
登録日2012-01-22
公開日2012-08-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The PAD region in the mycobacterial DinB homologue MsPolIV exhibits positional heterogeneity.
Acta Crystallogr.,Sect.D, 68, 2012
4H0E
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BU of 4h0e by Molmil
Crystal Structure of mutant ORR3 in complex with NTD of AraR
分子名称: 5'-D(*AP*AP*AP*TP*TP*TP*GP*TP*CP*CP*GP*TP*AP*CP*AP*TP*TP*TP*TP*AP*T)-3', 5'-D(*TP*AP*TP*AP*AP*AP*AP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*AP*AP*TP*T)-3', ACETATE ION, ...
著者Nair, D.T, Jain, D.
登録日2012-09-08
公開日2013-02-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.973 Å)
主引用文献Spacing between core recognition motifs determines relative orientation of AraR monomers on bipartite operators.
Nucleic Acids Res., 41, 2013
6IG1
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BU of 6ig1 by Molmil
DNA polymerase IV - DNA ternary complex 10
分子名称: DIPHOSPHATE, DNA polymerase IV, DTN3, ...
著者Kottur, J, Nair, D.T.
登録日2018-09-21
公開日2018-11-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.
Nucleic Acids Res., 46, 2018
5D4S
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BU of 5d4s by Molmil
Crystal Structure of AraR(DBD) in complex with operator ORX1
分子名称: Arabinose metabolism transcriptional repressor, DNA (5'-D(*AP*AP*AP*TP*AP*CP*AP*TP*AP*CP*GP*TP*AP*CP*AP*AP*AP*TP*AP*TP*T)-3'), DNA (5'-D(*TP*AP*AP*TP*AP*TP*TP*TP*GP*TP*AP*CP*GP*TP*AP*TP*GP*TP*AP*TP*T)-3')
著者Jain, D, Narayanan, N, Nair, D.T.
登録日2015-08-08
公開日2015-11-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.972 Å)
主引用文献Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators.
J.Biol.Chem., 291, 2016
5D4R
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BU of 5d4r by Molmil
Crystal Structure of AraR(DBD) in complex with operator ORE1
分子名称: Arabinose metabolism transcriptional repressor, DNA (5'-D(*AP*TP*AP*TP*TP*TP*GP*TP*AP*CP*GP*TP*AP*CP*TP*AP*AP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*TP*AP*GP*TP*AP*CP*GP*TP*AP*CP*AP*AP*AP*TP*A)-3')
著者Jain, D, Narayanan, N, Nair, D.T.
登録日2015-08-08
公開日2015-11-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators.
J.Biol.Chem., 291, 2016
7WVL
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BU of 7wvl by Molmil
Structure of P4A2 Fab in complex with Spike-RBD from SARS-CoV-2
分子名称: P4A2 Fab Light Chain, P4A2 Fab heavy chain, Spike protein S1
著者Narayanan, N, Nair, D.T.
登録日2022-02-10
公開日2022-12-07
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A broadly neutralizing monoclonal antibody overcomes the mutational landscape of emerging SARS-CoV-2 variants of concern.
Plos Pathog., 18, 2022
4R8U
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BU of 4r8u by Molmil
S-SAD structure of DINB-DNA Complex
分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA, DNA polymerase IV, ...
著者Kottur, J, Nair, D.T, Weinert, T, Oligeric, V, Wang, M.
登録日2014-09-03
公開日2015-01-14
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Fast native-SAD phasing for routine macromolecular structure determination
Nat.Methods, 12, 2015
8JRB
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BU of 8jrb by Molmil
Structure of DNA polymerase 1 from Aquifex pyrophilus
分子名称: DNA polymerase I
著者Clement, P, Nair, D.T.
登録日2023-06-16
公開日2024-05-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A conserved polar residue plays a critical role in mismatch detection in A-family DNA polymerases.
Int.J.Biol.Macromol., 269, 2024
6JBP
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BU of 6jbp by Molmil
Structure of MP-4 from Mucuna pruriens at 2.22 Angstroms
分子名称: Kunitz-type trypsin inhibitor-like 2 protein
著者Jain, A, Shikhi, M, Kumar, A, Kumar, A, Nair, D.T, Salunke, D.M.
登録日2019-01-26
公開日2020-01-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.217 Å)
主引用文献The structure of MP-4 from Mucuna pruriens at 2.22 angstrom resolution.
Acta Crystallogr.,Sect.F, 76, 2020
5YK4
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BU of 5yk4 by Molmil
Mismatch Repair Protein
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein MutS
著者Nirwal, S, Nair, D.T.
登録日2017-10-12
公開日2017-11-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.97 Å)
主引用文献Mechanism of formation of a toroid around DNA by the mismatch sensor protein.
Nucleic Acids Res., 46, 2018
4IR9
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BU of 4ir9 by Molmil
Polymerase-DNA complex
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(P*CP*TP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
著者Sharma, A, Nair, D.T.
登録日2013-01-14
公開日2013-04-17
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献A strategically located serine residue is critical for the mutator activity of DNA polymerase IV from Escherichia coli.
Nucleic Acids Res., 41, 2013
4IR1
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Polymerase-DNA Complex
分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*TP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
著者Sharma, A, Nair, D.T.
登録日2013-01-14
公開日2013-04-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献A strategically located serine residue is critical for the mutator activity of DNA polymerase IV from Escherichia coli.
Nucleic Acids Res., 41, 2013
5DSS
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BU of 5dss by Molmil
MP-4 contributes to snake venom neutralization by Mucuna pruriens seeds through stimulation of cross-reactive antibodies
分子名称: MP-4
著者Kumar, A, Nair, D.T, Salunke, D.M.
登録日2015-09-17
公開日2016-03-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献MP-4 Contributes to Snake Venom Neutralization by Mucuna pruriens Seeds through an Indirect Antibody-mediated Mechanism.
J.Biol.Chem., 291, 2016
6K0W
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BU of 6k0w by Molmil
DNA methyltransferase in complex with sinefungin
分子名称: Adenine specific DNA methyltransferase (Mod), SINEFUNGIN
著者Narayanan, N, Nair, D.T.
登録日2019-05-07
公開日2019-12-11
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Tetramerization at Low pH Licenses DNA Methylation Activity of M.HpyAXI in the Presence of Acid Stress.
J.Mol.Biol., 432, 2020
3BSB
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BU of 3bsb by Molmil
Crystal Structure of Human Pumilio1 in Complex with CyclinB reverse RNA
分子名称: 5'-R(*UP*UP*UP*AP*AP*UP*GP*UP*U)-3', Pumilio homolog 1
著者Gupta, Y.K, Nair, D.T, Wharton, R.P, Aggarwal, A.K.
登録日2007-12-23
公開日2008-04-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity.
Structure, 16, 2008
3BSX
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BU of 3bsx by Molmil
Crystal Structure of Human Pumilio 1 in complex with Puf5 RNA
分子名称: 5'-R(*UP*UP*GP*UP*AP*AP*UP*AP*UP*UP*A)-3', Pumilio homolog 1
著者Gupta, Y.K, Nair, D.T, Wharton, R.P, Aggarwal, A.K.
登録日2007-12-26
公開日2008-04-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity.
Structure, 16, 2008
1IIZ
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BU of 1iiz by Molmil
Crystal Structure of the Induced Antibacterial Protein from Tasar Silkworm, Antheraea mylitta
分子名称: LYSOZYME
著者Jain, D, Nair, D.T, Swaminathan, G.J, Abraham, E.G, Nagaraju, J, Salunke, D.M.
登録日2001-04-24
公開日2001-12-12
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of the induced antibacterial protein from tasar silkworm, Antheraea mylitta. Implications to molecular evolution.
J.Biol.Chem., 276, 2001

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