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De novo synthetic protein DIG14 (tetragonal space group)
分子名称:	De novo synthetic protein DIG14
著者	Mendes, S.R, Eckhard, U, Marcos, E, Gomis-Ruth, F.X.
登録日	2021-10-21
公開日	2022-10-12
最終更新日	2024-04-03
実験手法	X-RAY DIFFRACTION (2.5 Å)
主引用文献	De novo design of immunoglobulin-like domains Nat Commun, 13, 2022

7UHC

SARS-CoV-2 spike in complex with AHB2-2GS-SB175
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Multivalent miniprotein inhibitor AHB2-2GS-SB175, ...
著者	Park, Y.J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
登録日	2022-03-26
公開日	2022-06-08
最終更新日	2024-05-08
実験手法	ELECTRON MICROSCOPY (3.1 Å)
主引用文献	Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice. Sci Transl Med, 14, 2022

7UHB

SARS-CoV-2 spike in complex with AHB2-2GS-SB175 (local refinement of the RBD and AHB2)
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Multivalent miniprotein inhibitor AHB2-2GS-SB175, Spike glycoprotein
著者	Park, Y.J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
登録日	2022-03-26
公開日	2022-06-08
最終更新日	2024-05-08
実験手法	ELECTRON MICROSCOPY (3 Å)
主引用文献	Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice. Sci Transl Med, 14, 2022

4W4M

Crystal structure of PrgK 19-92
分子名称:	Lipoprotein PrgK
著者	Bergeron, J.R.C, Strynadka, N.C.J.
登録日	2014-08-15
公開日	2014-10-29
最終更新日	2023-12-27
実験手法	X-RAY DIFFRACTION (3.2 Å)
主引用文献	The Modular Structure of the Inner-Membrane Ring Component PrgK Facilitates Assembly of the Type III Secretion System Basal Body. Structure, 23, 2015

6VFJ

De novo designed icosahedral nanoparticle I53_dn5
分子名称:	I53_dn5A, I53_dn5B
著者	Antanasijevic, A, Ward, A.B.
登録日	2020-01-05
公開日	2020-08-12
最終更新日	2024-03-06
実験手法	ELECTRON MICROSCOPY (5.35 Å)
主引用文献	Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife, 9, 2020

6VFH

De novo designed tetrahedral nanoparticle T33_dn10
分子名称:	T33_dn10A, T33_dn10B
著者	Antanasijevic, A, Ward, A.B.
登録日	2020-01-05
公開日	2020-08-12
最終更新日	2024-03-06
実験手法	ELECTRON MICROSCOPY (3.86 Å)
主引用文献	Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife, 9, 2020

6VFK

De novo designed tetrahedral nanoparticle T33_dn10 displaying 4 copies of BG505-SOSIP trimer on the surface
分子名称:	BG505-SOSIP-T33_dn10A, T33_dn10B
著者	Antanasijevic, A, Ward, A.B.
登録日	2020-01-05
公開日	2020-07-22
最終更新日	2024-03-06
実験手法	ELECTRON MICROSCOPY (4.25 Å)
主引用文献	Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens. Plos Pathog., 16, 2020

6VFI

De novo designed octahedral nanoparticle O43_dn18
分子名称:	O43_dn18A, O43_dn18B
著者	Antanasijevic, A, Ward, A.B.
登録日	2020-01-05
公開日	2020-08-12
最終更新日	2020-08-19
実験手法	ELECTRON MICROSCOPY (4.54 Å)
主引用文献	Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife, 9, 2020

6VFL

BG505-SOSIP model reconstructed by subparticle extraction and refinement from a tetrahedral nanoparticle T33_dn10
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505-SOSIPv5.2(7S) - gp120, ...
著者	Antanasijevic, A, Ward, A.B.
登録日	2020-01-05
公開日	2020-07-22
最終更新日	2020-08-26
実験手法	ELECTRON MICROSCOPY (4.14 Å)
主引用文献	Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens. Plos Pathog., 16, 2020

8FBI

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
分子名称:	KWOCA_39
著者	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
登録日	2022-11-29
公開日	2023-03-22
最終更新日	2024-05-22
実験手法	X-RAY DIFFRACTION (3.61 Å)
主引用文献	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBJ

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
分子名称:	KWOCA_60
著者	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
登録日	2022-11-29
公開日	2023-03-22
最終更新日	2024-05-22
実験手法	X-RAY DIFFRACTION (3.25 Å)
主引用文献	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBN

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
分子名称:	KWOCA_73
著者	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
登録日	2022-11-29
公開日	2023-03-22
最終更新日	2024-05-22
実験手法	X-RAY DIFFRACTION (3.04 Å)
主引用文献	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBO

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
分子名称:	KWOCA_102
著者	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
登録日	2022-11-29
公開日	2023-03-22
最終更新日	2024-05-22
実験手法	X-RAY DIFFRACTION (3.4 Å)
主引用文献	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBK

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
分子名称:	KWOCA_65
著者	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
登録日	2022-11-29
公開日	2023-03-22
最終更新日	2024-05-22
実験手法	X-RAY DIFFRACTION (3.15 Å)
主引用文献	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

7RDH

Crystal structure of the de novo designed binding protein H3mb in complex with the 1968 influenza A virus hemagglutinin
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, De novo designed protein H3mb, ...
著者	Kadam, R.U, Wilson, I.A.
登録日	2021-07-09
公開日	2022-05-04
最終更新日	2023-10-18
実験手法	X-RAY DIFFRACTION (2.75 Å)
主引用文献	Design of protein-binding proteins from the target structure alone. Nature, 605, 2022

8Q1O

S-layer protein SlpA from Lactobacillus amylovorus, domain I (aa 32-209), important for Self-assembly
分子名称:	PHOSPHATE ION, S-layer
著者	Sagmeister, T, Grininger, C, Eder, M, Pavkov-Keller, T.
登録日	2023-08-01
公開日	2023-09-06
実験手法	X-RAY DIFFRACTION (3.401 Å)
主引用文献	Surface Layer Proteins of Lactobacilli To Be Published

7QLD

Crystal structure of S-layer protein SlpA from Lactobacillus acidophilus, domain I, Co-crystallization with HgCl2, Mutation Ser146Cys, (aa 32-198)
分子名称:	CHLORIDE ION, MERCURY (II) ION, S-layer protein
著者	Sagmeister, T, Vejzovic, D, Eder, M, Dordic, A, Pavkov-Keller, T.
登録日	2021-12-20
公開日	2022-12-28
実験手法	X-RAY DIFFRACTION (2.153 Å)
主引用文献	The self-assembly of the S-layer protein from Lactobacilli acidophilus To Be Published

7QLE

Crystal structure of S-layer protein SlpA from Lactobacillus acidophilus, domain I (aa 32-198)
分子名称:	S-layer protein
著者	Sagmeister, T, Eder, M, Vejzovic, D, Dordic, A, Pavkov-Keller, T.
登録日	2021-12-20
公開日	2022-12-28
最終更新日	2024-01-31
実験手法	X-RAY DIFFRACTION (2.6 Å)
主引用文献	The self-assembly of the S-layer protein from Lactobacilli acidophilus To Be Published

7QLH

Crystal structure of S-layer protein SlpA from Lactobacillus amylovorus, domain I (aa 48-213)
分子名称:	PHOSPHATE ION, S-layer, SODIUM ION
著者	Grininger, C, Sagmeister, T, Eder, E, Vejzovic, D, Pavkov-Keller, T.
登録日	2021-12-20
公開日	2022-12-28
最終更新日	2024-01-31
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	The self-assembly of the S-layer protein from Lactobacilli acidophilus to be published

8CTO

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in d6-DMSO with cis/trans switching (B-CT conformation)
分子名称:	Cyclic peptide D8.31 DAL-DPR-MLU-DVA-DAL-DPR-MLU-DVA
著者	Ramelot, T.A, Tejero, R, Montelione, G.T.
登録日	2022-05-16
公開日	2022-09-14
最終更新日	2022-09-28
実験手法	SOLUTION NMR
主引用文献	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

8CUN

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%)
分子名称:	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU
著者	Ramelot, T.A, Tejero, R, Montelione, G.T.
登録日	2022-05-17
公開日	2022-09-14
最終更新日	2022-09-28
実験手法	SOLUTION NMR
主引用文献	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

8CWA

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TC conformation, 53%)
分子名称:	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU
著者	Ramelot, T.A, Tejero, R, Montelione, G.T.
登録日	2022-05-18
公開日	2022-09-14
最終更新日	2022-09-28
実験手法	SOLUTION NMR
主引用文献	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

6P6F

BG505 SOSIP-I53-50NP
分子名称:	I53-50A.1NT1, I53-50B.4PT1
著者	Berndsen, Z.T, Ward, A.B.
登録日	2019-06-03
公開日	2019-06-19
最終更新日	2019-12-18
実験手法	ELECTRON MICROSCOPY (4.5 Å)
主引用文献	Enhancing and shaping the immunogenicity of native-like HIV-1 envelope trimers with a two-component protein nanoparticle. Nat Commun, 10, 2019

8AH9

De novo retro-aldolase RAbetaB-16.1
分子名称:	BENZOIC ACID, RAbetaB-16.1
著者	Mittl, P, Oualb Chaib, A, Hilvert, D.
登録日	2022-07-21
公開日	2023-08-16
最終更新日	2024-02-28
実験手法	X-RAY DIFFRACTION (1.747 Å)
主引用文献	Design and optimization of enzymatic activity in a de novo beta-barrel scaffold. Protein Sci., 31, 2022

8SZZ

CryoEM Structure of Computationally Designed Nanocage O32-ZL4
分子名称:	O32-ZL4 Component A, O32-ZL4 Component B, SODIUM ION
著者	Weidle, C, Borst, A.
登録日	2023-05-30
公開日	2023-11-01
最終更新日	2023-12-27
実験手法	ELECTRON MICROSCOPY (2.9 Å)
主引用文献	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

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表示件数:	25
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