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4OFA
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BU of 4ofa by Molmil
Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding domain protein 4: Implications for roles of Arg468 in mismatch recognition and catalysis
分子名称: 12-mer DNA(G), 12-mer DNA(T), MAGNESIUM ION, ...
著者Ouzon-Shubeita, H, Lin, Y.-L, Lee, S.
登録日2014-01-14
公開日2015-04-22
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structure of MBD4 bound to G:T mispair DNA
To be Published
4NM1
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BU of 4nm1 by Molmil
Structure of human DNA polymerase beta complexed with a nicked DNA containing a 8BrG-C at N-1 position and G-C at N position
分子名称: 5'-D(*CP*CP*GP*AP*CP*GP*(BGM)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ...
著者Koag, M.-C, Min, K, Monzingo, A.F, Lee, S.
登録日2013-11-14
公開日2014-01-22
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.415 Å)
主引用文献Structural basis for promutagenicity of 8-halogenated Guanine.
J.Biol.Chem., 289, 2014
4NM2
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BU of 4nm2 by Molmil
Structure of human DNA polymerase beta complexed with a nicked DNA containing a 8BrG-G at N-1 position and G-C at N position
分子名称: 5'-D(*CP*CP*GP*AP*CP*GP*(BGM)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ...
著者Koag, M.-C, Min, K, Monzingo, A.F, Lee, S.
登録日2013-11-14
公開日2014-01-22
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.524 Å)
主引用文献Structural basis for promutagenicity of 8-halogenated Guanine.
J.Biol.Chem., 289, 2014
4NLK
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BU of 4nlk by Molmil
Structure of human DNA polymerase beta complexed with 8BrG in the template base-paired with incoming non-hydrolyzable CTP
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, 5'-D(*CP*CP*GP*AP*CP*(BGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3', ...
著者Koag, M.-C, Min, K, Monzingo, A.F, Lee, S.
登録日2013-11-14
公開日2014-01-22
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.494 Å)
主引用文献Structural basis for promutagenicity of 8-halogenated Guanine.
J.Biol.Chem., 289, 2014
2AG4
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BU of 2ag4 by Molmil
Crystal Structure Analysis of GM2-activator protein complexed with phosphatidylcholine
分子名称: (7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE, Ganglioside GM2 activator, ISOPROPYL ALCOHOL, ...
著者Wright, C.S, Mi, L.Z, Lee, S, Rastinejad, F.
登録日2005-07-26
公開日2005-10-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure Analysis of Phosphatidylcholine-GM2-Activator Product Complexes: Evidence for Hydrolase Activity.
Biochemistry, 44, 2005
4OFH
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BU of 4ofh by Molmil
Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding domain protein 4: Implications for roles of Arg468 in mismatch recognition and catalysis
分子名称: 12-mer DNA(O6MeG), 12-mer DNA(T), MAGNESIUM ION, ...
著者Ouzon-Shubeita, H, Lin, Y.-L, Lee, S.
登録日2014-01-14
公開日2015-04-22
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Structure of MBD4 bound to O6MeG:T mispair DNA
To be Published
2AF9
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BU of 2af9 by Molmil
Crystal Structure analysis of GM2-Activator protein complexed with phosphatidylcholine
分子名称: Ganglioside GM2 activator, ISOPROPYL ALCOHOL, LAURIC ACID, ...
著者Wright, C.S, Mi, L.Z, Lee, S, Rastinejad, F.
登録日2005-07-25
公開日2005-10-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure Analysis of Phosphatidylcholine-GM2-Activator Product Complexes: Evidence for Hydrolase Activity.
Biochemistry, 44, 2005
7KLF
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BU of 7klf by Molmil
Ternary structure of Dpo4 bound to G in the template base paired with incoming dCTP
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2020-10-30
公開日2021-11-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.301 Å)
主引用文献Structure of human DNA polymerase beta complexed with 8OA in the template base paired with incoming non-hydrolyzable ATP
To Be Published
7KLE
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BU of 7kle by Molmil
Ternary structure of Dpo4 bound to N7mG in the template base paired with incoming dCTP
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*TP*AP*AP*CP*(FMG)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2020-10-30
公開日2021-11-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.003 Å)
主引用文献Structure of human DNA polymerase beta complexed with 8OA in the template base paired with incoming non-hydrolyzable ATP
To Be Published
7TFM
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BU of 7tfm by Molmil
Atomic Structure of the Leishmania spp. Hsp100 N-Domain
分子名称: ATP-dependent Clp protease subunit, heat shock protein 100 (HSP100), GLYCEROL
著者Mercado, J.M, Lee, S, Chang, C, Sung, N, Soong, L, Catic, A, Tsai, F.T.F.
登録日2022-01-06
公開日2022-02-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.055 Å)
主引用文献Atomic structure of the Leishmania spp. Hsp100 N-domain.
Proteins, 90, 2022
2N8V
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BU of 2n8v by Molmil
An NMR/SAXS structure of the PKI domain of the honeybee dicistrovirus, Israeli acute paralysis virus (IAPV) IRES
分子名称: RNA (70-MER)
著者Au, H.H, Cornilescu, G, Mouzakis, K.D, Burke, J.E, Ren, Q, Lee, S, Butcher, S.E, Jan, E.
登録日2015-10-27
公開日2015-11-11
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Global shape mimicry of tRNA within a viral internal ribosome entry site mediates translational reading frame selection.
Proc.Natl.Acad.Sci.USA, 112, 2015
4J4K
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BU of 4j4k by Molmil
Crystal structure of glucose isomerase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Xylose isomerase, ...
著者Kim, M.K, An, Y.J, Lee, S, Jeong, C.S, Cha, S.S.
登録日2013-02-07
公開日2014-04-30
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of glucose isomerase
To be Published
2F66
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BU of 2f66 by Molmil
Structure of the ESCRT-I endosomal trafficking complex
分子名称: Protein SRN2, SULFATE ION, Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease, ...
著者Kostelansky, M.S, Lee, S, Kim, J, Hurley, J.H.
登録日2005-11-28
公開日2006-04-18
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural and functional organization of the ESCRT-I trafficking complex.
Cell(Cambridge,Mass.), 125, 2006
7L69
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BU of 7l69 by Molmil
Crystal structure of human polymerase eta complexed with syn N7-benzylguanine
分子名称: DNA (5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*AP*TP*(7BG)P*CP*TP*CP*AP*CP*AP*CP*T)-3'), DNA polymerase eta
著者Jung, H, Lee, S.
登録日2020-12-23
公開日2022-01-05
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Crystal structure of human polymerase eta complexed with syn N7-benzylguanine
To Be Published
7MZ2
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BU of 7mz2 by Molmil
Structure of human DNA polymerase beta complexed with dzA at N-1 of the template base paired with incoming dTTP
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*(4DU)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2021-05-23
公開日2022-05-25
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.088 Å)
主引用文献Structure of human DNA polymerase beta complexed with dzA at N-1 of the template base paired with incoming dTTP
To Be Published
7MZ1
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BU of 7mz1 by Molmil
Structure of human DNA polymerase beta complexed with dzA in the template base paired with incoming non-hydrolyzable TTP
分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*(4DU)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2021-05-23
公開日2022-05-25
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.175 Å)
主引用文献Structure of human DNA polymerase beta complexed with dzA in the template base paired with incoming non-hydrolyzable TTP
To Be Published
7MZ0
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BU of 7mz0 by Molmil
Structure of human DNA polymerase beta complexed with dzA as the template base in a 1-nucleotide gapped DNA
分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*(4DU)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2021-05-23
公開日2022-05-25
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.021 Å)
主引用文献Structure Of Human Dna Polymerase Beta Complexed With dzA As The Template Base In A 1-Nucleotide Gapped Dna
To Be Published
7MZ4
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BU of 7mz4 by Molmil
Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP
分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*(DZM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2021-05-24
公開日2022-06-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.076 Å)
主引用文献Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP
To Be Published
7MZ8
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BU of 7mz8 by Molmil
Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) at N-1 of the template base paired with incoming dTTP
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*(DZM)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2021-05-24
公開日2022-06-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure Of Human Dna Polymerase Beta Complexed With 8Oa As The Template Base In A 1-Nucleotide Gapped Dna
To Be Published
7MZ3
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BU of 7mz3 by Molmil
Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) as the template base in a 1-nucleotide gapped DNA
分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*(DZM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2021-05-24
公開日2022-06-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.418 Å)
主引用文献Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) as the template base in a 1-nucleotide gapped DNA
To Be Published
2F6M
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BU of 2f6m by Molmil
Structure of a Vps23-C:Vps28-N subcomplex
分子名称: DECYLAMINE-N,N-DIMETHYL-N-OXIDE, MAGNESIUM ION, Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease, ...
著者Kostelansky, M.S, Lee, S, Kim, J, Hurley, J.H.
登録日2005-11-29
公開日2006-04-18
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and functional organization of the ESCRT-I trafficking complex.
Cell(Cambridge,Mass.), 125, 2006
4JCH
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BU of 4jch by Molmil
OSH4 bound to an electrophilic oxysterol
分子名称: (3beta,9beta,22R,25R)-3-hydroxyfurost-5-en-27-yl propanoate, Protein KES1
著者Koag, M.C, Kou, Y.I, Monzingo, A.F, Lee, S.
登録日2013-02-21
公開日2014-03-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of OSH4 bound to an electrophilic oxysterol
To be Published
7EPP
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BU of 7epp by Molmil
Recombinant Alfalfa Mosaic virus coat protein virus-like particle (rAMV-CP VLP)
分子名称: Capsid protein
著者Jeong, H, Lee, S.
登録日2021-04-27
公開日2021-11-17
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.4 Å)
主引用文献Characterization of alfalfa mosaic virus capsid protein using Cryo-EM.
Biochem.Biophys.Res.Commun., 559, 2021
5EDW
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BU of 5edw by Molmil
Ternary structure of Dpo4 bound to G in the template base paired with incoming dTTP
分子名称: CALCIUM ION, DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*GP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2015-10-22
公開日2016-11-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Structure of Dpo4 DNA polymerase replicating across the genotoxic N7-methylguanine lesion
To Be Published
5EOZ
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BU of 5eoz by Molmil
Mutagenicity of 7-Benzyl guanine lesion and Replication by Human DNA Polymerase beta
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*(GFL)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
著者Koag, M.C, Lee, S.
登録日2015-11-10
公開日2016-11-23
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.088 Å)
主引用文献Structural and kinetic studies of the effect of guanine-N7 alkylation and metal cofactors on DNA replication.
Biochemistry, 2018

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