Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5WJI
DownloadVisualize
BU of 5wji by Molmil
Crystal structure of the F61S mutant of HsNUDT16
Descriptor: ACETIC ACID, CHLORIDE ION, SULFATE ION, ...
Authors:Thirawatananond, P, Gabelli, S.B.
Deposit date:2017-07-23
Release date:2018-10-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural analyses of NudT16-ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins.
Sci Rep, 9, 2019
7TDZ
DownloadVisualize
BU of 7tdz by Molmil
Cryo-EM model of protomer of the cytoplasmic ring of the nuclear pore complex from Xenopus laevis
Descriptor: Nuclear pore complex protein, Nuclear pore complex protein Nup85, Nuclear pore complex protein Nup96, ...
Authors:Fontana, P, Wu, H.
Deposit date:2022-01-03
Release date:2022-06-22
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Structure of cytoplasmic ring of nuclear pore complex by integrative cryo-EM and AlphaFold.
Science, 376, 2022
8PQQ
DownloadVisualize
BU of 8pqq by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 E88Q Mutant bound to Clofarabine
Descriptor: 2-CHLORO-9-(2-DEOXY-2-FLUORO-B -D-ARABINOFURANOSYL)-9H-PURIN-6-AMINE, MAGNESIUM ION, Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, M.C.
Deposit date:2023-07-11
Release date:2024-02-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
8PQP
DownloadVisualize
BU of 8pqp by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 D62N Mutant bound to ImmH-Forodesine
Descriptor: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, M.C.
Deposit date:2023-07-11
Release date:2024-02-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.709 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
8PQR
DownloadVisualize
BU of 8pqr by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to DAD_Immucillin-H
Descriptor: 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one, Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, C.M.
Deposit date:2023-07-11
Release date:2024-02-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.586 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
8PQT
DownloadVisualize
BU of 8pqt by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to Bis-Tris
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, C.M.
Deposit date:2023-07-11
Release date:2024-02-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
8PQS
DownloadVisualize
BU of 8pqs by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 E88A Mutant
Descriptor: Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, C.M.
Deposit date:2023-07-11
Release date:2024-02-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
8WE5
DownloadVisualize
BU of 8we5 by Molmil
Durio zibethinus trypsin inhibitor DzTI-6
Descriptor: 21 kDa seed protein-like, GLYCEROL
Authors:Deetanya, P, Wangkanont, K.
Deposit date:2023-09-17
Release date:2024-09-18
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Durio zibethinus trypsin inhibitor
To Be Published
8WFO
DownloadVisualize
BU of 8wfo by Molmil
Durio zibethinus trypsin inhibitor DzTI-4
Descriptor: 21 kDa seed protein-like, ACETATE ION, PENTAETHYLENE GLYCOL, ...
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-20
Release date:2024-09-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Durio zibethinus trypsin inhibitor DzTI-4
To Be Published
8WHC
DownloadVisualize
BU of 8whc by Molmil
Durio zibethinus trypsin inhibitor DzTI-9
Descriptor: 21 kDa seed protein-like, ACETATE ION, GLYCEROL
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-23
Release date:2024-09-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Durio zibethinus trypsin inhibitor DzTI-9
To Be Published
8WI1
DownloadVisualize
BU of 8wi1 by Molmil
Durio zibethinus trypsin inhibitor DzTI-8
Descriptor: 21 kDa seed protein-like
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-24
Release date:2024-09-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Durio zibethinus trypsin inhibitor DzTI-8
To Be Published
8WIN
DownloadVisualize
BU of 8win by Molmil
Durio zibethinus trypsin inhibitor DzTI-12
Descriptor: 21 kDa seed protein-like
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-25
Release date:2024-09-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Durio zibethinus trypsin inhibitor DzTI-12
To Be Published
8WIO
DownloadVisualize
BU of 8wio by Molmil
Durio zibethinus trypsin inhibitor DzTI-10
Descriptor: 21 kDa seed protein-like, SULFATE ION
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-25
Release date:2024-09-25
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Durio zibethinus trypsin inhibitor DzTI-10
To Be Published
8WK1
DownloadVisualize
BU of 8wk1 by Molmil
Bovine trypsin in complex with Durio zibethinus trypsin inhibitor DzTI-4
Descriptor: 21 kDa seed protein-like, ACETATE ION, Cationic trypsin, ...
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-26
Release date:2024-10-02
Method:X-RAY DIFFRACTION (2 Å)
Cite:Bovine trypsin in complex with Durio zibethinus trypsin inhibitor DzTI-4
To Be Published
8WKB
DownloadVisualize
BU of 8wkb by Molmil
Durio zibethinus trypsin inhibitor DzTI-7
Descriptor: 21 kDa seed protein-like, CALCIUM ION, GLYCEROL
Authors:Deentanya, P, Wangkanont, K.
Deposit date:2023-09-27
Release date:2024-10-02
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Durio zibethinus trypsin inhibitor DzTI-7
To Be Published
8RH3
DownloadVisualize
BU of 8rh3 by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to Gemcitabine
Descriptor: (2~{R},3~{R})-4,4-bis(fluoranyl)-2-(hydroxymethyl)oxolan-3-ol, Nucleoside 2-deoxyribosyltransferase
Authors:Tang, P, Harding, C.J, Czekster, C.M.
Deposit date:2023-12-14
Release date:2024-02-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
8QC0
DownloadVisualize
BU of 8qc0 by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT ribosylated
Descriptor: Nucleoside 2-deoxyribosyltransferase, ZINC ION, alpha-D-ribofuranose
Authors:Tang, P, Harding, C.J, Czekster, C.M.
Deposit date:2023-08-25
Release date:2024-02-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
3D4F
DownloadVisualize
BU of 3d4f by Molmil
SHV-1 beta-lactamase complex with LN1-255
Descriptor: (3R)-4-{[(3,4-dihydroxyphenyl)acetyl]oxy}-N-(2-formylindolizin-3-yl)-3-sulfino-D-valine, Beta-lactamase SHV-1, CYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE
Authors:Pattanaik, P, Bethel, C.R, Hujer, A.M, Bonomo, R.A, Buynak, J.D, van den Akker, F.
Deposit date:2008-05-14
Release date:2009-02-10
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Strategic Design of an Effective {beta}-Lactamase Inhibitor: LN-1-255, A 6-ALKYLIDENE-2'-SUBSTITUTED PENICILLIN SULFONE
J.Biol.Chem., 284, 2009
5W6X
DownloadVisualize
BU of 5w6x by Molmil
Crystal structure of the HsNUDT16 in complex with Mg+2 and ADP-ribose
Descriptor: ACETIC ACID, ADENOSINE-5-DIPHOSPHORIBOSE, DI(HYDROXYETHYL)ETHER, ...
Authors:Thirawatananond, P, Gabelli, S.B.
Deposit date:2017-06-18
Release date:2018-12-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural analyses of NudT16-ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins.
Sci Rep, 9, 2019
5W6Z
DownloadVisualize
BU of 5w6z by Molmil
Crystal structure of the H24W mutant of HsNUDT16
Descriptor: SODIUM ION, U8 snoRNA-decapping enzyme
Authors:Thirawatananond, P, Gabelli, S.B.
Deposit date:2017-06-18
Release date:2018-12-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structural analyses of NudT16-ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins.
Sci Rep, 9, 2019
5VY2
DownloadVisualize
BU of 5vy2 by Molmil
Crystal structure of the F36A mutant of HsNUDT16
Descriptor: SODIUM ION, U8 snoRNA-decapping enzyme
Authors:Thirawatananond, P, Gabelli, S.B.
Deposit date:2017-05-24
Release date:2018-11-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural analyses of NudT16-ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins.
Sci Rep, 9, 2019
6B09
DownloadVisualize
BU of 6b09 by Molmil
Crystal structure of HsNUDT16 in complex with diADPR (soaked)
Descriptor: CHLORIDE ION, MAGNESIUM ION, SODIUM ION, ...
Authors:Thirawatananond, P, Gabelli, S.B.
Deposit date:2017-09-14
Release date:2019-01-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural analyses of NudT16-ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins.
Sci Rep, 9, 2019
1QHH
DownloadVisualize
BU of 1qhh by Molmil
STRUCTURE OF DNA HELICASE WITH ADPNP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, PROTEIN (PCRA (SUBUNIT))
Authors:Soultanas, P, Dillingham, M.S, Velankar, S.S, Wigley, D.B.
Deposit date:1999-05-14
Release date:1999-07-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:DNA binding mediates conformational changes and metal ion coordination in the active site of PcrA helicase.
J.Mol.Biol., 290, 1999
1QHG
DownloadVisualize
BU of 1qhg by Molmil
STRUCTURE OF DNA HELICASE MUTANT WITH ADPNP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP-DEPENDENT HELICASE PCRA, MAGNESIUM ION
Authors:Soultanas, P, Dillingham, M.S, Velankar, S.S, Wigley, D.B.
Deposit date:1999-05-14
Release date:1999-07-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:DNA binding mediates conformational changes and metal ion coordination in the active site of PcrA helicase.
J.Mol.Biol., 290, 1999
7DJR
DownloadVisualize
BU of 7djr by Molmil
Crystal structure of SARS-CoV-2 main protease (no ligand)
Descriptor: 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Deetanya, P, Wangkanont, K.
Deposit date:2020-11-21
Release date:2021-06-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Interaction of 8-anilinonaphthalene-1-sulfonate with SARS-CoV-2 main protease and its application as a fluorescent probe for inhibitor identification.
Comput Struct Biotechnol J, 19, 2021

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon