Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8J9G
DownloadVisualize
BU of 8j9g by Molmil
CrtSPARTA hetero-dimer bound with guide-target, state 1
Descriptor: DNA (25-MER), MAGNESIUM ION, Piwi domain-containing protein, ...
Authors:Li, Z.X, Guo, L.J, Huang, P.P, Xiao, Y.B, Chen, M.R.
Deposit date:2023-05-03
Release date:2024-03-06
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Auto-inhibition and activation of a short Argonaute-associated TIR-APAZ defense system.
Nat.Chem.Biol., 20, 2024
8J8H
DownloadVisualize
BU of 8j8h by Molmil
SPARTA monomer bound with guide-target, state 2
Descriptor: DNA (25-MER), MAGNESIUM ION, Piwi domain-containing protein, ...
Authors:Li, Z.X, Guo, L.J, Huang, P.P, Xiao, Y.B, Chen, M.R.
Deposit date:2023-05-01
Release date:2024-03-06
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Auto-inhibition and activation of a short Argonaute-associated TIR-APAZ defense system.
Nat.Chem.Biol., 20, 2024
8J84
DownloadVisualize
BU of 8j84 by Molmil
Short ago complexed with TIR-APAZ
Descriptor: Piwi domain-containing protein, TIR domain-containing protein
Authors:Guo, L.J, Huang, P.P, Li, Z.X, Xiao, Y.B, Chen, M.R.
Deposit date:2023-04-30
Release date:2024-03-13
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Auto-inhibition and activation of a short Argonaute-associated TIR-APAZ defense system.
Nat.Chem.Biol., 20, 2024
8J9P
DownloadVisualize
BU of 8j9p by Molmil
SPARTA dimer bound with guide-target
Descriptor: DNA (25-MER), MAGNESIUM ION, Piwi domain-containing protein, ...
Authors:Li, Z.X, Guo, L.J, Huang, P.P, Xiao, Y.B, Chen, M.R.
Deposit date:2023-05-04
Release date:2024-03-06
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Auto-inhibition and activation of a short Argonaute-associated TIR-APAZ defense system.
Nat.Chem.Biol., 20, 2024
9IW3
DownloadVisualize
BU of 9iw3 by Molmil
Cryo-EM structure of Lactobacillus casei DdmE bound with guide and target
Descriptor: DNA (25-MER), DNA (5'-D(P*CP*TP*TP*GP*AP*TP*AP*CP*GP*AP*C)-3'), DNA (5'-D(P*TP*GP*AP*CP*GP*GP*CP*TP*CP*TP*AP*AP*TP*CP*T)-3'), ...
Authors:Huang, P.P, Chen, M.R, Xiao, Y.B.
Deposit date:2024-07-25
Release date:2025-01-01
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:The mechanism of bacterial defense system DdmDE from Lactobacillus casei.
Cell Res., 34, 2024
9IX4
DownloadVisualize
BU of 9ix4 by Molmil
Cryo-EM structure of Lactobacillus casei DdmD dimer bound with DNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*AP*TP*GP*AP*GP*TP*AP*TP*AP*TP*CP*C)-3'), ...
Authors:Huang, P.P, Chen, M.R, Xiao, Y.B.
Deposit date:2024-07-26
Release date:2025-01-01
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:The mechanism of bacterial defense system DdmDE from Lactobacillus casei.
Cell Res., 34, 2024
9IXM
DownloadVisualize
BU of 9ixm by Molmil
Cryo-EM structure of Lactobacillus casei DdmDE bound with DNA
Descriptor: DNA (30-MER), DNA (5'-D(P*TP*GP*AP*CP*GP*GP*CP*TP*CP*TP*AP*AP*TP*CP*T)-3'), DdmD, ...
Authors:Huang, P.P, Chen, M.R, Xiao, Y.B.
Deposit date:2024-07-29
Release date:2025-01-01
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:The mechanism of bacterial defense system DdmDE from Lactobacillus casei.
Cell Res., 34, 2024
3H00
DownloadVisualize
BU of 3h00 by Molmil
Structure of the C-terminal Domain of a Putative HIV-1 gp41 Fusion Intermediate
Descriptor: Envelope glycoprotein gp160
Authors:Liu, J.
Deposit date:2009-04-08
Release date:2009-12-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Role of a putative gp41 dimerization domain in human immunodeficiency virus type 1 membrane fusion.
J.Virol., 84, 2010
3V5Q
DownloadVisualize
BU of 3v5q by Molmil
Discovery of a selective TRK Inhibitor with efficacy in rodent cancer tumor models
Descriptor: 1-(3-{[(3Z)-2-oxo-3-(1H-pyrrol-2-ylmethylidene)-2,3-dihydro-1H-indol-6-yl]amino}phenyl)-3-[3-(trifluoromethyl)phenyl]urea, CHLORIDE ION, NT-3 growth factor receptor
Authors:Kreusch, A.
Deposit date:2011-12-16
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2001 Å)
Cite:Discovery of GNF-5837, a Selective TRK Inhibitor with Efficacy in Rodent Cancer Tumor Models.
ACS Med Chem Lett, 3, 2012
3G7A
DownloadVisualize
BU of 3g7a by Molmil
HIV gp41 six-helix bundle composed of a chimeric alpha+alpha/beta-peptide analogue of the CHR domain in complex with an NHR domain alpha-peptide
Descriptor: ACETYL GROUP, Chimeric alpha+alpha/beta-peptide analogue of the HIV gp41 CHR domain, Envelope glycoprotein gp160, ...
Authors:Horne, W.S, Johnson, L.M, Gellman, S.H.
Deposit date:2009-02-09
Release date:2009-10-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and biological mimicry of protein surface recognition by alpha/beta-peptide foldamers
Proc.Natl.Acad.Sci.USA, 106, 2009
7XK8
DownloadVisualize
BU of 7xk8 by Molmil
Cryo-EM structure of the Neuromedin U receptor 2 (NMUR2) in complex with G Protein and its endogeneous Peptide-Agonist NMU25
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
Authors:Zhao, W, Wenru, Z, Mu, W, Minmin, L, Shutian, C, Tingting, T, Gisela, S, Holger, W, Albert, B, Cuiying, Y, Xiaojing, C, Han, S, Wu, B, Zhao, Q.
Deposit date:2022-04-19
Release date:2023-02-22
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Ligand recognition and activation of neuromedin U receptor 2.
Nat Commun, 13, 2022
8Z3K
DownloadVisualize
BU of 8z3k by Molmil
The structure of type III CRISPR-associated deaminase in complex 2cA6-2ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Adenosine deaminase domain-containing protein, RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3'), ...
Authors:Chen, M.R, Li, Z.X, Xiao, Y.B.
Deposit date:2024-04-15
Release date:2024-12-11
Last modified:2025-03-05
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Antiviral signaling of a type III CRISPR-associated deaminase.
Science, 387, 2025
8Z40
DownloadVisualize
BU of 8z40 by Molmil
The structure of type III CRISPR-associated deaminase apo form
Descriptor: Adenosine deaminase domain-containing protein
Authors:Chen, M.R, Li, Z.X, Xiao, Y.B.
Deposit date:2024-04-16
Release date:2024-12-11
Last modified:2025-03-05
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Antiviral signaling of a type III CRISPR-associated deaminase.
Science, 387, 2025
8Z3R
DownloadVisualize
BU of 8z3r by Molmil
The structure of type III CRISPR-associated deaminase in complex cA4
Descriptor: 3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine, Adenosine deaminase domain-containing protein, ZINC ION
Authors:Chen, M.R, Li, Z.X, Xiao, Y.B.
Deposit date:2024-04-16
Release date:2024-12-25
Last modified:2025-03-05
Method:ELECTRON MICROSCOPY (2.28 Å)
Cite:Antiviral signaling of a type III CRISPR-associated deaminase.
Science, 387, 2025
8Z3P
DownloadVisualize
BU of 8z3p by Molmil
The structure of type III CRISPR-associated deaminase in complex cA6 and ATP, fully activated
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Adenosine deaminase domain-containing protein, MAGNESIUM ION, ...
Authors:Chen, M.R, Li, Z.X, Xiao, Y.B.
Deposit date:2024-04-15
Release date:2024-12-25
Last modified:2025-03-05
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Antiviral signaling of a type III CRISPR-associated deaminase.
Science, 387, 2025
7XMR
DownloadVisualize
BU of 7xmr by Molmil
CryoEM structure of the somatostatin receptor 2 (SSTR2) in complex with Gi1 and its endogeneous peptide ligand SST-14
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
Authors:Wenli, Z, Shuo, H, Na, Q, Wenbo, Z, Mengjie, L, Dehua, Y, Ming-Wei, W, Wu, B, Zhao, Q.
Deposit date:2022-04-26
Release date:2022-08-03
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural insights into ligand recognition and selectivity of somatostatin receptors.
Cell Res., 32, 2022
7XMS
DownloadVisualize
BU of 7xms by Molmil
CryoEM structure of somatostatin receptor 4 (SSTR4) in complex with Gi1 and its endogeneous ligand SST-14
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
Authors:Wenli, Z, Shuo, H, Na, Q, Wenbo, Z, Mengjie, L, Dehua, Y, Ming-Wei, W, Wu, B, Zhao, Q.
Deposit date:2022-04-26
Release date:2022-08-03
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural insights into ligand recognition and selectivity of somatostatin receptors.
Cell Res., 32, 2022
7XMT
DownloadVisualize
BU of 7xmt by Molmil
CryoEM structure of somatostatin receptor 4 (SSTR4) with Gi1 and J-2156
Descriptor: (2~{S})-2-[[(2~{S})-4-azanyl-2-[(4-methylnaphthalen-1-yl)sulfonylamino]butanoyl]amino]-3-phenyl-propanimidic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Wenli, Z, Shuo, H, Na, Q, Wenbo, Z, Mengjie, L, Dehua, Y, Ming-Wei, W, Wu, B, Zhao, Q.
Deposit date:2022-04-26
Release date:2022-08-03
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural insights into ligand recognition and selectivity of somatostatin receptors.
Cell Res., 32, 2022
8ZVX
DownloadVisualize
BU of 8zvx by Molmil
Crystal structure of snFPITE-n2
Descriptor: GLYCEROL, PENTAETHYLENE GLYCOL, SULFATE ION, ...
Authors:Chen, X, Yang, H.
Deposit date:2024-06-12
Release date:2025-04-02
Last modified:2025-05-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A facultative plasminogen-independent thrombolytic enzyme from Sipunculus nudus.
Nat Commun, 16, 2025
8ZVS
DownloadVisualize
BU of 8zvs by Molmil
Crystal structure of snFPITE-n1
Descriptor: SULFATE ION, phenylmethanesulfonic acid, snFPITE-n1
Authors:Chen, X, Yang, H, Hu, Y.L.
Deposit date:2024-06-12
Release date:2025-04-02
Last modified:2025-05-07
Method:X-RAY DIFFRACTION (1.987 Å)
Cite:A facultative plasminogen-independent thrombolytic enzyme from Sipunculus nudus.
Nat Commun, 16, 2025
3H01
DownloadVisualize
BU of 3h01 by Molmil
Structure of the C-terminal Domain of a Putative HIV-1 gp41 Fusion Intermediate
Descriptor: Envelope glycoprotein gp160, HEXANE-1,6-DIOL
Authors:Liu, J.
Deposit date:2009-04-08
Release date:2009-12-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Role of a putative gp41 dimerization domain in human immunodeficiency virus type 1 membrane fusion.
J.Virol., 84, 2010
3GWO
DownloadVisualize
BU of 3gwo by Molmil
Structure of the C-terminal Domain of a Putative HIV-1 gp41 Fusion Intermediate
Descriptor: Envelope glycoprotein gp160, O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500), SODIUM ION
Authors:Liu, J.
Deposit date:2009-04-01
Release date:2009-12-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Role of a putative gp41 dimerization domain in human immunodeficiency virus type 1 membrane fusion.
J.Virol., 84, 2010
3CK4
DownloadVisualize
BU of 3ck4 by Molmil
A heterospecific leucine zipper tetramer
Descriptor: GCN4 leucine zipper, MAGNESIUM ION
Authors:Liu, J.
Deposit date:2008-03-14
Release date:2008-10-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A heterospecific leucine zipper tetramer.
Chem.Biol., 15, 2008
4FFV
DownloadVisualize
BU of 4ffv by Molmil
Crystal Structure of Dipeptidyl Peptidase IV (DPP4, DPP-IV, CD26) in Complex with 11A19 Fab
Descriptor: 11A19 Fab heavy chain, 11A19 Fab light chain, Dipeptidyl peptidase 4
Authors:Wang, Z, Sudom, A, Walker, N.P, Min, X.
Deposit date:2012-06-01
Release date:2012-12-12
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:An Inhibitory Antibody Against DPP IV Improves Glucose Tolerance in vivo - Validation of Large Molecule Approach for DPP IV Inhibition
To be published
4OCH
DownloadVisualize
BU of 4och by Molmil
Apo structure of Smr domain of MutS2 from Deinococcus radiodurans
Descriptor: Endonuclease MutS2, GLYCEROL
Authors:Zhang, H, Zhao, Y, Xu, Q, Hua, Y.J.
Deposit date:2014-01-09
Release date:2014-06-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4001 Å)
Cite:Structural and functional studies of MutS2 from Deinococcus radiodurans.
Dna Repair, 21, 2014

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon