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8FCZ
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BU of 8fcz by Molmil
Crystal structure of ground-state rhodopsin in complex with a nanobody
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody Nb2, ...
Authors:Salom, D, Palczewski, K, Kiser, P.D.
Deposit date:2022-12-01
Release date:2023-08-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structural basis for the allosteric modulation of rhodopsin by nanobody binding to its extracellular domain.
Nat Commun, 14, 2023
8RS0
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BU of 8rs0 by Molmil
Structure of RyR1 in detergent in primed state in complex with nanobody and FKBP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
Authors:Li, C, Efremov, R.G.
Deposit date:2024-01-24
Release date:2024-10-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8RRS
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BU of 8rrs by Molmil
Structure of mouse RyR2 solubilised in detergent in open state in complex with Ca2+, ATP, caffeine and Nb9657.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
Authors:Li, C, Efremov, R.G.
Deposit date:2024-01-23
Release date:2024-10-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8RRT
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BU of 8rrt by Molmil
Structure of rabbit RyR1 reconstituted into lipid liposomes in open state in complex with FKBP and Nb9657
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
Authors:Li, C, Efremov, R.G.
Deposit date:2024-01-23
Release date:2024-10-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8RRU
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BU of 8rru by Molmil
Structure of RyR1 reconstituted into lipid liposomes in primed state in complex with FKBP and Nb9657.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
Authors:Li, C, Efremov, R.G.
Deposit date:2024-01-23
Release date:2024-10-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8RRW
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BU of 8rrw by Molmil
Structure of RyR1 in detergent in open state in complex with FKBP and Nb9657.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
Authors:Li, C, Efremov, R.G.
Deposit date:2024-01-23
Release date:2024-10-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8RRV
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BU of 8rrv by Molmil
Structure of RyR1 in detergent in close state in complex with FKBP and Nb9657.
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1, ZINC ION, ...
Authors:Li, C, Efremov, R.G.
Deposit date:2024-01-23
Release date:2024-10-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8S5Z
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BU of 8s5z by Molmil
Cryo-EM structure of hydroxychloroquine-bound human SLC19A3 in inward-open state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hydroxychloroquine, Nb3.3, ...
Authors:Gabriel, F, Loew, C.
Deposit date:2024-02-26
Release date:2024-10-02
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of thiamine transport and drug recognition by SLC19A3.
Nat Commun, 15, 2024
8S62
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BU of 8s62 by Molmil
Cryo-EM structure of amprolium-bound human SLC19A3 in inward-open state
Descriptor: Amprolium, Nb3.7, Thiamine transporter 2
Authors:Gabriel, F, Loew, C.
Deposit date:2024-02-26
Release date:2024-10-02
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Structural basis of thiamine transport and drug recognition by SLC19A3.
Nat Commun, 15, 2024
8S4U
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BU of 8s4u by Molmil
Cryo-EM structure of apo human SLC19A3 in outward-open state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody 3.4, Thiamine transporter 2
Authors:Gabriel, F, Loew, C.
Deposit date:2024-02-22
Release date:2024-10-02
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Structural basis of thiamine transport and drug recognition by SLC19A3.
Nat Commun, 15, 2024
8S5U
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BU of 8s5u by Molmil
Cryo-EM structure of thiamine-bound human SLC19A3 in outward-open state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM, Nb3.4, ...
Authors:Gabriel, F, Loew, C.
Deposit date:2024-02-26
Release date:2024-10-02
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Structural basis of thiamine transport and drug recognition by SLC19A3.
Nat Commun, 15, 2024
8S61
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BU of 8s61 by Molmil
Cryo-EM structure of thiamine-bound human SLC19A3 in inward-open state
Descriptor: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM, Nb3.7, Thiamine transporter 2
Authors:Gabriel, F, Loew, C.
Deposit date:2024-02-26
Release date:2024-10-02
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Structural basis of thiamine transport and drug recognition by SLC19A3.
Nat Commun, 15, 2024
8S5W
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BU of 8s5w by Molmil
Cryo-EM structure of fedratinib-bound human SLC19A3 in inward-open state
Descriptor: N-tert-butyl-3-{[5-methyl-2-({4-[2-(pyrrolidin-1-yl)ethoxy]phenyl}amino)pyrimidin-4-yl]amino}benzenesulfonamide, Nb3.7, Thiamine transporter 2
Authors:Gabriel, F, Loew, C.
Deposit date:2024-02-26
Release date:2024-10-02
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Structural basis of thiamine transport and drug recognition by SLC19A3.
Nat Commun, 15, 2024
8RRX
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BU of 8rrx by Molmil
Structure of RyR1 reconstituted into lipid nanodisc in primed state in complex with Ca2+, ATP, caffeine and Nb9657
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, ...
Authors:Li, C, Efremov, R.G.
Deposit date:2024-01-23
Release date:2024-10-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
5GSP
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BU of 5gsp by Molmil
RIBONUCLEASE T1/3'-GMP, 9 WEEKS
Descriptor: CALCIUM ION, GUANOSINE-3'-MONOPHOSPHATE, RIBONUCLEASE T1
Authors:Zegers, I, Wyns, L.
Deposit date:1997-12-09
Release date:1998-03-18
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Hydrolysis of a slow cyclic thiophosphate substrate of RNase T1 analyzed by time-resolved crystallography.
Nat.Struct.Biol., 5, 1998
5G5X
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BU of 5g5x by Molmil
CBS domain tandem of site-2 protease from Archaeoglobus fulgidus in complex with llama Nanobody - nucleotide-bound form
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, NANOBODY, ...
Authors:Schacherl, M, Baumann, U.
Deposit date:2016-06-09
Release date:2017-05-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystallographic and biochemical characterization of the dimeric architecture of site-2 protease.
Biochim. Biophys. Acta, 1859, 2017
5G5R
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BU of 5g5r by Molmil
CBS domain tandem of site-2 protease from Archaeoglobus fulgidus in complex with llama Nanobody - apo form
Descriptor: NANOBODY, SITE-2 PROTEASE, SULFATE ION
Authors:Schacherl, M, Baumann, U.
Deposit date:2016-06-02
Release date:2017-05-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic and biochemical characterization of the dimeric architecture of site-2 protease.
Biochim. Biophys. Acta, 1859, 2017
6N50
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BU of 6n50 by Molmil
Metabotropic Glutamate Receptor 5 Extracellular Domain in Complex with Nb43 and L-quisqualic acid
Descriptor: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Metabotropic glutamate receptor 5, ...
Authors:Koehl, A, Hu, H, Feng, D, Sun, B, Chu, M, Weis, W.I, Skiniotis, G, Mathiesen, J.M, Kobilka, B.K.
Deposit date:2018-11-20
Release date:2019-01-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.751 Å)
Cite:Structural insights into the activation of metabotropic glutamate receptors.
Nature, 566, 2019
4AQ1
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BU of 4aq1 by Molmil
Structure of the SbsB S-layer protein of Geobacillus stearothermophilus PV72p2 in complex with nanobody KB6
Descriptor: CALCIUM ION, NBKB6, SBSB PROTEIN
Authors:Baranova, E, Remaut, H.
Deposit date:2012-04-12
Release date:2012-06-13
Last modified:2012-10-03
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Sbsb Structure and Lattice Reconstruction Unveil Ca21 Triggered S-Layer Assembly
Nature, 487, 2012
6N4Y
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BU of 6n4y by Molmil
Metabotropic Glutamate Receptor 5 Extracellular Domain with Nb43
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Metabotropic glutamate receptor 5, ...
Authors:Koehl, A, Hu, H, Feng, D, Sun, B, Chu, M, Weis, W.I, Mathiesen, J.M, Skiniotis, G, Kobilka, B.K.
Deposit date:2018-11-20
Release date:2019-01-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.262 Å)
Cite:Structural insights into the activation of metabotropic glutamate receptors.
Nature, 566, 2019
6N4X
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BU of 6n4x by Molmil
Metabotropic Glutamate Receptor 5 Apo Form Ligand Binding Domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MAGNESIUM ION, Metabotropic glutamate receptor 5
Authors:Koehl, A, Hu, H, Feng, D, Sun, B, Weis, W.I, Skiniotis, G.S, Mathiesen, J.M, Kobilka, B.K.
Deposit date:2018-11-20
Release date:2019-01-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural insights into the activation of metabotropic glutamate receptors.
Nature, 566, 2019
6N52
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BU of 6n52 by Molmil
Metabotropic Glutamate Receptor 5 Apo Form
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Metabotropic glutamate receptor 5
Authors:Koehl, A, Hu, H, Feng, D, Sun, B, Weis, W.I, Skiniotis, G.S, Mathiesen, J.M, Kobilka, B.K.
Deposit date:2018-11-20
Release date:2019-01-23
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural insights into the activation of metabotropic glutamate receptors.
Nature, 566, 2019
6N51
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BU of 6n51 by Molmil
Metabotropic Glutamate Receptor 5 bound to L-quisqualate and Nb43
Descriptor: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Metabotropic glutamate receptor 5, ...
Authors:Koehl, A, Hu, H, Feng, D, Sun, B, Weis, W.I, Skiniotis, G.S, Mathiesen, J.M, Kobilka, B.K.
Deposit date:2018-11-20
Release date:2019-01-23
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural insights into the activation of metabotropic glutamate receptors.
Nature, 566, 2019
6NI2
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BU of 6ni2 by Molmil
Stabilized beta-arrestin 1-V2T subcomplex of a GPCR-G protein-beta-arrestin mega-complex
Descriptor: Beta-arrestin-1, Fab30 Heavy Chain, Fab30 Light Chain, ...
Authors:Nguyen, A.H, Thomsen, A.R.B, Cahill, T.J, des Georges, A, Lefkowitz, R.J.
Deposit date:2018-12-26
Release date:2019-11-20
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of an endosomal signaling GPCR-G protein-beta-arrestin megacomplex.
Nat.Struct.Mol.Biol., 26, 2019
5USF
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BU of 5usf by Molmil
Leishmania donovani tyrosyl-tRNA synthetase in complex with nanobody and inhibitor
Descriptor: 5'-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE, Immunoglobulin heavy chain variable region, Tyrosyl-tRNA synthetase, ...
Authors:Barros-Alvarez, X, Hol, W.G.J.
Deposit date:2017-02-13
Release date:2017-05-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Leishmania donovani tyrosyl-tRNA synthetase structure in complex with a tyrosyl adenylate analog and comparisons with human and protozoan counterparts.
Biochimie, 138, 2017

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PDB entries from 2024-10-16

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