Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7MID
DownloadVisualize
BU of 7mid by Molmil
Sub-complex of Cas4-Cas1-Cas2 bound PAM containing DNA
Descriptor: CRISPR-associated endoribonuclease Cas2, CRISPR-associated exonuclease Cas4/endonuclease Cas1 fusion, DNA (33-MER), ...
Authors:Hu, C.Y, Ke, A.K.
Deposit date:2021-04-16
Release date:2021-11-17
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Mechanism for Cas4-assisted directional spacer acquisition in CRISPR-Cas.
Nature, 598, 2021
7MI4
DownloadVisualize
BU of 7mi4 by Molmil
Symmetrical PAM-PAM prespacer bound Cas4/Cas1/Cas2 complex
Descriptor: CRISPR-associated endoribonuclease Cas2, CRISPR-associated exonuclease Cas4/endonuclease Cas1 fusion, DNA (35-MER), ...
Authors:Hu, C.Y, Ke, A.K.
Deposit date:2021-04-16
Release date:2021-11-17
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Mechanism for Cas4-assisted directional spacer acquisition in CRISPR-Cas.
Nature, 598, 2021
7MI5
DownloadVisualize
BU of 7mi5 by Molmil
Asymmetrical PAM-Non PAM prespacer bound Cas4/Cas1/Cas2 complex
Descriptor: CRISPR-associated endoribonuclease Cas2, CRISPR-associated exonuclease Cas4/endonuclease Cas1 fusion, DNA (26-MER), ...
Authors:Hu, C.Y, Ke, A.K.
Deposit date:2021-04-16
Release date:2021-11-17
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Mechanism for Cas4-assisted directional spacer acquisition in CRISPR-Cas.
Nature, 598, 2021
7MIB
DownloadVisualize
BU of 7mib by Molmil
Half integration complex of Cas4/Cas1/Cas2 with Cas4 still on the Non-PAM side
Descriptor: CRISPR-associated endoribonuclease Cas2, CRISPR-associated exonuclease Cas4/endonuclease Cas1 fusion, DNA (31-MER), ...
Authors:Hu, C.Y, Ke, A.K.
Deposit date:2021-04-16
Release date:2021-11-17
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (5.8 Å)
Cite:Mechanism for Cas4-assisted directional spacer acquisition in CRISPR-Cas.
Nature, 598, 2021
7MI9
DownloadVisualize
BU of 7mi9 by Molmil
Full integration complex of Cas1/Cas2 from Cas4-containing system
Descriptor: CRISPR-associated endoribonuclease Cas2, CRISPR-associated exonuclease Cas4/endonuclease Cas1 fusion, DNA (5'-D(P*CP*GP*GP*AP*AP*AP*AP*GP*AP*GP*CP*C)-3'), ...
Authors:Hu, C.Y, Ke, A.K.
Deposit date:2021-04-16
Release date:2021-11-17
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.89 Å)
Cite:Mechanism for Cas4-assisted directional spacer acquisition in CRISPR-Cas.
Nature, 598, 2021
2OHE
DownloadVisualize
BU of 2ohe by Molmil
Structural and mutational analysis of tRNA-Intron splicing endonuclease from Thermoplasma acidophilum DSM 1728
Descriptor: tRNA-splicing endonuclease
Authors:Kim, Y.K, Mizutani, K, Rhee, K.H, Lee, W.H, Park, S.Y, Hwang, K.Y.
Deposit date:2007-01-10
Release date:2007-11-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and Mutational Analysis of tRNA Intron-Splicing Endonuclease from Thermoplasma acidophilum DSM 1728: Catalytic Mechanism of tRNA Intron-Splicing Endonucleases
J.Bacteriol., 189, 2007
2OHC
DownloadVisualize
BU of 2ohc by Molmil
structural and mutational analysis of tRNA-intron splicing endonuclease from Thermoplasma acidophilum DSM1728
Descriptor: tRNA-splicing endonuclease
Authors:Kim, Y.K, Mizutani, K, Rhee, K.H, Lee, W.H, Park, S.Y, Hwang, K.Y.
Deposit date:2007-01-10
Release date:2007-11-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and Mutational Analysis of tRNA Intron-Splicing Endonuclease from Thermoplasma acidophilum DSM 1728: Catalytic Mechanism of tRNA Intron-Splicing Endonucleases
J.Bacteriol., 189, 2007
5XVN
DownloadVisualize
BU of 5xvn by Molmil
E. far Cas1-Cas2/prespacer binary complex
Descriptor: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (28-MER), ...
Authors:Xiao, Y, Ng, S, Nam, K.H, Ke, A.
Deposit date:2017-06-28
Release date:2017-10-04
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
Nature, 550, 2017
2NX8
DownloadVisualize
BU of 2nx8 by Molmil
The crystal structure of the tRNA-specific adenosine deaminase from Streptococcus pyogenes
Descriptor: PHOSPHATE ION, TRNA-specific adenosine deaminase, ZINC ION
Authors:Hwang, K.Y, Lee, W.-H, Kim, Y.K.
Deposit date:2006-11-17
Release date:2007-08-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the tRNA-specific adenosine deaminase from Streptococcus pyogenes
Proteins, 68, 2007
3E6E
DownloadVisualize
BU of 3e6e by Molmil
Crystal structure of Alanine racemase from E.faecalis complex with cycloserine
Descriptor: Alanine racemase, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE
Authors:Hwang, K.Y, Priyadarshi, A, Lee, E.H, Sung, M.W.
Deposit date:2008-08-15
Release date:2009-08-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the alanine racemase from Enterococcus faecalis.
Biochim.Biophys.Acta, 1794, 2009
3DRE
DownloadVisualize
BU of 3dre by Molmil
Crystal structure of Human Brain-type Creatine Kinase
Descriptor: Creatine kinase B-type
Authors:Moon, J.H, Bong, S.M, Hwang, K.Y, Chi, Y.M.
Deposit date:2008-07-11
Release date:2009-03-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural studies of human brain-type creatine kinase complexed with the ADP-Mg2+-NO3- -creatine transition-state analogue complex
Febs Lett., 582, 2008
3DRB
DownloadVisualize
BU of 3drb by Molmil
Crystal structure of Human Brain-type Creatine Kinase
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Creatine kinase B-type, MAGNESIUM ION
Authors:Moon, J.H, Bong, S.M, Hwang, K.Y, Chi, Y.M.
Deposit date:2008-07-11
Release date:2009-03-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural studies of human brain-type creatine kinase complexed with the ADP-Mg2+-NO3- -creatine transition-state analogue complex
Febs Lett., 582, 2008
3E5P
DownloadVisualize
BU of 3e5p by Molmil
Crystal structure of alanine racemase from E.faecalis
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Alanine racemase, NONAETHYLENE GLYCOL, ...
Authors:Hwang, K.Y, Priyadarshi, A, Lee, E.H, Sung, M.W.
Deposit date:2008-08-14
Release date:2009-08-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the alanine racemase from Enterococcus faecalis.
Biochim.Biophys.Acta, 1794, 2009
3FLM
DownloadVisualize
BU of 3flm by Molmil
Crystal structure of menD from E.coli
Descriptor: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase
Authors:Priyadarshi, A, Hwang, K.Y.
Deposit date:2008-12-19
Release date:2009-03-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights of the MenD from Escherichia coli reveal ThDP affinity.
Biochem.Biophys.Res.Commun., 380, 2009
3FTJ
DownloadVisualize
BU of 3ftj by Molmil
Crystal structure of the periplasmic region of MacB from Actinobacillus actinomycetemcomitans
Descriptor: Macrolide export ATP-binding/permease protein macB
Authors:Xu, Y, Ha, N.C.
Deposit date:2009-01-13
Release date:2009-05-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Crystal structure of the periplasmic region of MacB, a noncanonic ABC transporter
Biochemistry, 48, 2009
6J43
DownloadVisualize
BU of 6j43 by Molmil
Proteinase K determined by PAL-XFEL
Descriptor: CALCIUM ION, Proteinase K
Authors:Lee, S.J, Park, J.
Deposit date:2019-01-07
Release date:2020-01-15
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Application of a high-throughput microcrystal delivery system to serial femtosecond crystallography.
J.Appl.Crystallogr., 53, 2020
6K28
DownloadVisualize
BU of 6k28 by Molmil
Crystal structure of the 5-(Hydroxyethyl)-methylthiazole Kinase ThiM from Klebsiella pneumonia in complex with TZE
Descriptor: 2-(4-METHYL-THIAZOL-5-YL)-ETHANOL, Hydroxyethylthiazole kinase, MAGNESIUM ION
Authors:Chen, Y, Wang, L, Shang, F, Lan, J, Liu, W, Xu, Y.
Deposit date:2019-05-13
Release date:2019-07-10
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Structural insight of the 5-(Hydroxyethyl)-methylthiazole kinase ThiM involving vitamin B1 biosynthetic pathway from the Klebsiella pneumoniae.
Biochem.Biophys.Res.Commun., 518, 2019
6K5E
DownloadVisualize
BU of 6k5e by Molmil
Crystal structure of BioH from Klebsiella pneumonia
Descriptor: Pimeloyl-[acyl-carrier protein] methyl ester esterase
Authors:Wang, L, Chen, Y.
Deposit date:2019-05-28
Release date:2019-07-17
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.257 Å)
Cite:Structural insight into the carboxylesterase BioH from Klebsiella pneumoniae.
Biochem.Biophys.Res.Commun., 520, 2019
6K2L
DownloadVisualize
BU of 6k2l by Molmil
Crystal structure of the Siderophore-interacting protein SipS from Aeromonas hydrophila
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Siderophore-interacting protein
Authors:Shang, F, Lan, J, Liu, W, Xu, Y.
Deposit date:2019-05-14
Release date:2019-06-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the Siderophore-interacting protein SIP from Aeromonas hydrophila.
Biochem.Biophys.Res.Commun., 519, 2019
6JYY
DownloadVisualize
BU of 6jyy by Molmil
Crystal structure of the 5-(Hydroxyethyl)-methylthiazole Kinase ThiM from Klebsiella pneumonia
Descriptor: Hydroxyethylthiazole kinase
Authors:Chen, Y, Wang, L, Shang, F, Lan, J, Liu, W, Xu, Y.
Deposit date:2019-04-29
Release date:2019-06-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insight of the 5-(Hydroxyethyl)-methylthiazole kinase ThiM involving vitamin B1 biosynthetic pathway from the Klebsiella pneumoniae.
Biochem.Biophys.Res.Commun., 518, 2019
6K63
DownloadVisualize
BU of 6k63 by Molmil
The crystal structure of cytidine deaminase from Klebsiella pneumoniae
Descriptor: 1,4-DIETHYLENE DIOXIDE, Cytidine deaminase, ZINC ION
Authors:Liu, W, Shang, F, Lan, J, Chen, Y, Wang, L, Xu, Y.
Deposit date:2019-06-01
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.073 Å)
Cite:Biochemical and structural analysis of the Klebsiella pneumoniae cytidine deaminase CDA.
Biochem.Biophys.Res.Commun., 519, 2019
6K2Q
DownloadVisualize
BU of 6k2q by Molmil
Aeromonas hydrophila MtaN-2 complexed with adenine
Descriptor: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, ADENINE
Authors:Chen, J, Liu, W, Wang, L, Shang, F, Lan, J, Chen, Y, Xu, Y.
Deposit date:2019-05-15
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Aeromonas hydrophila Cytoplasmic 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase.
Biochemistry, 58, 2019
6KMO
DownloadVisualize
BU of 6kmo by Molmil
Crystal structure of a novel esterase CinB from Enterobacter asburiae
Descriptor: Alpha/beta hydrolase
Authors:Shang, F, Xu, Y.
Deposit date:2019-07-31
Release date:2019-09-04
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and functional analyses of the lipase CinB from Enterobacter asburiae.
Biochem.Biophys.Res.Commun., 519, 2019
7YGF
DownloadVisualize
BU of 7ygf by Molmil
Crystal structure of YggS from Fusobacterium nucleatum
Descriptor: Pyridoxal phosphate homeostasis protein, SULFATE ION
Authors:He, S.R, Chan, Y.Y, Wang, L.L, Bai, X, Bu, T.T, Zhang, J, Xu, Y.B.
Deposit date:2022-07-11
Release date:2022-10-12
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural and Functional Analysis of the Pyridoxal Phosphate Homeostasis Protein YggS from Fusobacterium nucleatum.
Molecules, 27, 2022
5YXC
DownloadVisualize
BU of 5yxc by Molmil
Crystal structure of Zinc binding protein ZinT in complex with citrate from E. coli
Descriptor: CITRIC ACID, Metal-binding protein ZinT, ZINC ION
Authors:Chen, J, Wang, L, Shang, F, Xu, Y.
Deposit date:2017-12-04
Release date:2017-12-20
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.763 Å)
Cite:Crystal structure of E. coli ZinT with one zinc-binding mode and complexed with citrate
Biochem. Biophys. Res. Commun., 500, 2018

227561

PDB entries from 2024-11-20

PDB statisticsPDBj update infoContact PDBjnumon