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7VRR
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BU of 7vrr by Molmil
Crystal structure of Arabidopsis thaliana HDT1
Descriptor: Histone deacetylase HDT1
Authors:Kumar, A, Bobde, R.C, Vasudevan, D.
Deposit date:2021-10-23
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Plant-specific HDT family histone deacetylases are nucleoplasmins.
Plant Cell, 34, 2022
8QN0
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BU of 8qn0 by Molmil
Soluble epoxide hydrolase in complex with RK3
Descriptor: (3~{a}~{R},6~{a}~{S})-~{N}-[(2,4-dichlorophenyl)methyl]-5-(4-methylphenyl)sulfonyl-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrole-2-carboxamide, 1,2-ETHANEDIOL, Bifunctional epoxide hydrolase 2
Authors:Kumar, A, Zhu, F, Ehrler, J.M.H, Li, F, Empel, C, Xu, Y, Atodiresei, I, Koenigs, R.M, Proschak, E, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2023-09-25
Release date:2024-02-14
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Photosensitization enables Pauson-Khand-type reactions with nitrenes.
Science, 383, 2024
8QMZ
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BU of 8qmz by Molmil
Soluble epoxide hydrolase in complex with RK4
Descriptor: (3~{a}~{R},6~{a}~{S})-~{N}-[(2,4-dichlorophenyl)methyl]-2-(4-methylphenyl)sulfonyl-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrole-5-carboxamide, 1,2-ETHANEDIOL, Bifunctional epoxide hydrolase 2
Authors:Kumar, A, Zhu, F, Ehrler, J.M.H, Li, F, Empel, C, Xu, Y, Atodiresei, I, Koenigs, R.M, Proschak, E, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2023-09-25
Release date:2024-02-14
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Photosensitization enables Pauson-Khand-type reactions with nitrenes.
Science, 383, 2024
8QZD
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BU of 8qzd by Molmil
Soluble epoxide hydrolase in complex with Epoxykinin
Descriptor: 1,2-ETHANEDIOL, 2-[5-bromanyl-3-[2,2,2-tris(fluoranyl)ethanoyl]indol-1-yl]-N-cycloheptyl-ethanamide, BROMIDE ION, ...
Authors:Kumar, A, Ehrler, J.M.H, Ziegler, S, Doetsch, L, Proschak, E, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2023-10-27
Release date:2024-02-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Discovery of the sEH Inhibitor Epoxykynin as a Potent Kynurenine Pathway Modulator.
J.Med.Chem., 67, 2024
5AX2
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BU of 5ax2 by Molmil
Crystal structure of S.cerevisiae Kti11p
Descriptor: CADMIUM ION, Diphthamide biosynthesis protein 3
Authors:Kumar, A, Nagarathinam, K, Tanabe, M, Balbach, J.
Deposit date:2015-07-13
Release date:2016-07-20
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Hyperbolic Pressure-Temperature Phase Diagram of the Zinc-Finger Protein apoKti11 Detected by NMR Spectroscopy.
J Phys Chem B, 123, 2019
4K55
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BU of 4k55 by Molmil
Structure of the extracellular domain of butyrophilin BTN3A1 in complex with (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate (HMBPP)
Descriptor: (2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate, Butyrophilin subfamily 3 member A1
Authors:Kumar, A, Mori, L, De Libero, G.
Deposit date:2013-04-13
Release date:2013-07-24
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Butyrophilin 3A1 binds phosphorylated antigens and stimulates human gamma delta T cells.
Nat.Immunol., 14, 2013
4JKW
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BU of 4jkw by Molmil
Structure of the extracellular domain of butyrophilin BTN3A1 in complex with Isopentenyl pyrophosphate (IPP)
Descriptor: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, Butyrophilin subfamily 3 member A1
Authors:Kumar, A, Mori, L, De Libero, G.
Deposit date:2013-03-12
Release date:2013-07-24
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Butyrophilin 3A1 binds phosphorylated antigens and stimulates human gamma delta T cells.
Nat.Immunol., 14, 2013
2MS6
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BU of 2ms6 by Molmil
Human Telomeric G-quadruplex DNA sequence (TTAGGGT)4 complexed with Flavonoid Quercetin
Descriptor: 3,5,7,3',4'-PENTAHYDROXYFLAVONE, DNA_(5'-D(*TP*TP*AP*GP*GP*GP*T)-3')
Authors:Kumar, A, Tawani, A.
Deposit date:2014-07-24
Release date:2015-01-28
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural Insight into the interaction of Flavonoids with Human Telomeric Sequence
Sci Rep, 5, 2015
2MS5
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BU of 2ms5 by Molmil
Structural dynamics of double-helical RNA having CAG motif
Descriptor: RNA_(5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3')
Authors:Kumar, A, Tawani, A.
Deposit date:2014-07-23
Release date:2015-01-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Insights Reveal the Dynamics of the Repeating r(CAG) Transcript Found in Huntington's Disease (HD) and Spinocerebellar Ataxias (SCAs)
Plos One, 10, 2015
3I4L
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BU of 3i4l by Molmil
Structural characterization for the nucleotide binding ability of subunit A with AMP-PNP of the A1AO ATP synthase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, A-TYPE ATP SYNTHASE CATALYTIC SUBUNIT A, ...
Authors:Manimekalai, S.M.S, Kumar, A, Balakrishna, A.M, Jeyakanthan, J, Gruber, G.
Deposit date:2009-07-01
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution.
J.Mol.Biol., 396, 2010
3I73
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BU of 3i73 by Molmil
Structural characterization for the nucleotide binding ability of subunit A with ADP of the A1AO ATP synthase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, A-TYPE ATP SYNTHASE CATALYTIC SUBUNIT A, ...
Authors:Manimekalai, S.M.S, Kumar, A, Balakrishna, A.M, Gruber, G.
Deposit date:2009-07-08
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution.
J.Mol.Biol., 396, 2010
3I72
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BU of 3i72 by Molmil
Structural characterization for the nucleotide binding ability of subunit A with SO4 of the A1AO ATP synthase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, A-TYPE ATP SYNTHASE CATALYTIC SUBUNIT A, ...
Authors:Manimekalai, S.M.S, Kumar, A, Balakrishna, A.M, Gruber, G.
Deposit date:2009-07-07
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution.
J.Mol.Biol., 396, 2010
5CNX
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BU of 5cnx by Molmil
Crystal structure of Xaa-Pro aminopeptidase from Escherichia coli K12
Descriptor: Aminopeptidase YpdF, CACODYLATE ION, GLYCEROL, ...
Authors:Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D.
Deposit date:2015-07-18
Release date:2016-07-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases
Proteins, 2018
2NCQ
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BU of 2ncq by Molmil
Structural insights of r(CGG) motif found in Fragile X Syndrome and Fragile-X associated tremor/ataxia syndrome (FXTAS) at 45 degree C
Descriptor: RNA_(5'-R(P*CP*CP*GP*CP*GP*GP*CP*GP*G)-3')
Authors:Kumar, A, Mishra, S.K.
Deposit date:2016-04-12
Release date:2017-04-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural insights reveal the dynamics of the repeating r(CGG) motif found in Fragile X Syndrome and Fragile-X associated tremor/ataxia syndrome (FXTAS)
To be Published
2NCR
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BU of 2ncr by Molmil
Structural insight for dynamics of r(CGG) motif RNA found in Fragile X syndrome/ Fragile X tremor ataxia at 25 degree C
Descriptor: RNA_(5'-R(P*CP*CP*GP*CP*GP*GP*CP*GP*G)-3')
Authors:Kumar, A, Mishra, S.K.
Deposit date:2016-04-12
Release date:2017-04-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural insights reveal the dynamics of the repeating r(CGG) motif found in Fragile X Syndrome and Fragile-X associated tremor/ataxia syndrome (FXTAS)
To be Published
8S59
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BU of 8s59 by Molmil
Cryo-EM structure of the active dodecameric Methanosarcina mazei glutamine synthetase.
Descriptor: 2-OXOGLUTARIC ACID, Glutamine synthetase
Authors:Kumar, A, Schuller, J.M, Schmitz, R.A.
Deposit date:2024-02-23
Release date:2025-01-08
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (2.39 Å)
Cite:2-oxoglutarate triggers assembly of active dodecameric Methanosarcina mazei glutamine synthetase.
Elife, 13, 2025
2NYQ
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BU of 2nyq by Molmil
Structure of Vibrio proteolyticus aminopeptidase with a bound Trp fragment of dLWCF
Descriptor: Aminopeptidase, Tetrapeptide, ZINC ION
Authors:Bennett, B, Kumar, A, Narayanan, B, Kim, J.-J.
Deposit date:2006-11-21
Release date:2007-10-30
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Substrate recognition by the leucine aminopeptidase from Vibrio proteolyticus
To be Published
5XBP
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BU of 5xbp by Molmil
Oxygenase component of 3-nitrotoluene dioxygenase from Diaphorobacter sp. strain DS2
Descriptor: 3NT oxygenase alpha subunit, 3NT oxygenase beta subunit, FE (III) ION, ...
Authors:Ramaswamy, S, Kumari, A, Singh, D, Gurunath, R.
Deposit date:2017-03-21
Release date:2017-04-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural and functional studies of ferredoxin and oxygenase components of 3-nitrotoluene dioxygenase from Diaphorobacter sp. strain DS2.
PLoS ONE, 12, 2017
5XI1
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BU of 5xi1 by Molmil
Structural Insight of Flavonoids binding to CAG repeat RNA that causes Huntington's Disease (HD) and Spinocerebellar Ataxia (SCAs)
Descriptor: 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE, RNA (5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3')
Authors:Tawani, A, Mishra, S.K, Khan, E, Kumar, A.
Deposit date:2017-04-25
Release date:2018-08-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Myricetin Reduces Toxic Level of CAG Repeats RNA in Huntington's Disease (HD) and Spino Cerebellar Ataxia (SCAs).
ACS Chem. Biol., 13, 2018
7F8S
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BU of 7f8s by Molmil
Pennisetum glaucum (Pearl millet) dehydroascorbate reductase (DHAR) with catalytic cysteine (Cy20) in sulphenic and sulfinic acid forms.
Descriptor: Dehydroascorbate reductase, SULFATE ION
Authors:Das, B.K, Kumar, A, Sreeshma, N.S, Arockiasamy, A.
Deposit date:2021-07-02
Release date:2022-01-19
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Comparative kinetic analysis of ascorbate (Vitamin-C) recycling dehydroascorbate reductases from plants and humans.
Biochem.Biophys.Res.Commun., 591, 2021
8I7E
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BU of 8i7e by Molmil
Crystal structure of Glyceraldehyde 3-phosphate dehydrogenase from Salmonella typhi at 2.05A
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Kumar, N, Dilawari, R, Chaubey, G.K, Modanwal, R, Talukdar, S, Dhiman, A, Chaudhary, S, Patidar, A, Kumar, A, Raje, C.I, Raje, M, Kumaran, S.
Deposit date:2023-01-31
Release date:2023-09-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of Glyceraldehyde 3-phosphate dehydrogenase from Salmonella typhi at 2.05A
To Be Published
8ZEI
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BU of 8zei by Molmil
Crystal structure of human cytosolic beta-alanyl lysine dipeptidase with crystal soaked in beta-alanyl histidine
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, HISTIDINE, ...
Authors:Chandravanshi, K, Kumar, A, Makde, R.D.
Deposit date:2024-05-06
Release date:2025-05-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of human cytosolic beta-alanyl lysine dipeptidase with crystal soaked in beta-alanyl histidine
To Be Published
8ZEL
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BU of 8zel by Molmil
Crystal structure of human cytosolic beta-alanyl lysine dipeptidase Tyr314Phe mutant with a crystal soaked in beta-alanyl ornithine
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, L-ornithine, ...
Authors:Chandravanshi, K, Kumar, A, Makde, R.D.
Deposit date:2024-05-06
Release date:2025-05-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of human cytosolic beta-alanyl lysine dipeptidase Tyr314Phe mutant with a crystal soaked in beta-alanyl ornithine
To Be Published
5X49
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BU of 5x49 by Molmil
Crystal Structure of Human mitochondrial X-prolyl Aminopeptidase (XPNPEP3)
Descriptor: (2S,3R)-3-amino-2-hydroxy-4-phenylbutanoic acid, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ...
Authors:Singh, R, Kumar, A, Ghosh, B, Jamdar, S, Makde, R.D.
Deposit date:2017-02-10
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of the human aminopeptidase XPNPEP3 and comparison of its in vitro activity with Icp55 orthologs: Insights into diverse cellular processes.
J. Biol. Chem., 292, 2017
5XEV
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BU of 5xev by Molmil
Crystal Structure of a novel Xaa-Pro dipeptidase from Deinococcus radiodurans
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Are, V.N, Kumar, A, Ghosh, B, Makde, R.D.
Deposit date:2017-04-06
Release date:2017-10-18
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of a novel prolidase from Deinococcus radiodurans identifies new subfamily of bacterial prolidases.
Proteins, 85, 2017

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