Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2MJ4
DownloadVisualize
BU of 2mj4 by Molmil
Neurotoxin II from snake venom Naja Oxiana in solution
Descriptor: Short neurotoxin 1
Authors:Lesovoy, D.M, Nolde, S.B, Bocharov, E.V, Lyukmanova, E.N, Arseniev, A.S.
Deposit date:2013-12-26
Release date:2015-01-28
Method:SOLUTION NMR
Cite:An NMR-based approach for validation of protein side-chains dynamics in silico
To be Published
2M6A
DownloadVisualize
BU of 2m6a by Molmil
NMR spatial structure of the antimicrobial peptide Tk-Amp-X2
Descriptor: Predicted protein
Authors:Usmanova, D.R, Mineev, K.S, Arseniev, A.S, Berkut, A.A, Oparin, P.B, Grishin, E.V, Vassilevski, A.A.
Deposit date:2013-03-28
Release date:2014-04-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural similarity between defense peptide from wheat and scorpion neurotoxin permits rational functional design
J.Biol.Chem., 289, 2014
2L2T
DownloadVisualize
BU of 2l2t by Molmil
Solution NMR structure of the ErbB4 dimeric membrane domain
Descriptor: Receptor tyrosine-protein kinase erbB-4
Authors:Mineev, K.S, Bocharov, E.V, Goncharuk, M.V, Arseniev, A.S.
Deposit date:2010-08-27
Release date:2011-09-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural and thermodynamic insight into the process of "weak" dimerization of the ErbB4 transmembrane domain by solution NMR.
Biochim. Biophys. Acta, 1818, 2012
2LB7
DownloadVisualize
BU of 2lb7 by Molmil
Hevein-type Antifungal Peptide with a Unique 10-Cysteine Motif
Descriptor: Antimicrobial peptide 1a
Authors:Balashova, T.A, Vassilevski, A.A, Odintsova, T.I, Grishin, E.V, Egorov, T.A, Arseniev, A.S.
Deposit date:2011-03-23
Release date:2011-04-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of a defense peptide from wheat with a 10-cysteine motif.
Biochem.Biophys.Res.Commun., 411, 2011
2K1L
DownloadVisualize
BU of 2k1l by Molmil
NMR structures of dimeric transmembrane domain of the receptor tyrosine kinase EphA1 in lipid bicelles at pH 6.3
Descriptor: Ephrin type-A receptor 1
Authors:Mayzel, M.L, Bocharov, E.V, Arseniev, A.S, Goncharuk, M.V.
Deposit date:2008-03-07
Release date:2008-09-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Spatial Structure and pH-dependent Conformational Diversity of Dimeric Transmembrane Domain of the Receptor Tyrosine Kinase EphA1.
J.Biol.Chem., 283, 2008
2JWA
DownloadVisualize
BU of 2jwa by Molmil
ErbB2 transmembrane segment dimer spatial structure
Descriptor: Receptor tyrosine-protein kinase erbB-2
Authors:Mineev, K.S, Bocharov, E.V, Arseniev, A.S.
Deposit date:2007-10-09
Release date:2008-01-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Spatial Structure of the Dimeric Transmembrane Domain of the Growth Factor Receptor ErbB2 Presumably Corresponding to the Receptor Active State
J.Biol.Chem., 283, 2008
2LZL
DownloadVisualize
BU of 2lzl by Molmil
FGFR3tm
Descriptor: Fibroblast growth factor receptor 3
Authors:Lesovoy, D.M, Bocharov, E.V, Goncharuk, S.A, Arseniev, A.S.
Deposit date:2012-10-04
Release date:2013-10-09
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of FGFR3 Transmembrane Domain Dimer: Implications for Signaling and Human Pathologies.
Structure, 21, 2013
2KS1
DownloadVisualize
BU of 2ks1 by Molmil
Heterodimeric association of Transmembrane domains of ErbB1 and ErbB2 receptors Enabling Kinase Activation
Descriptor: Epidermal growth factor receptor, Receptor tyrosine-protein kinase erbB-2
Authors:Mineev, K.S, Bocharov, E.V, Pustovalova, Y.E, Bocharova, O.V, Chupin, V.V, Arseniev, A.S.
Deposit date:2009-12-24
Release date:2010-06-09
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Spatial Structure of the Transmembrane Domain Heterodimer of ErbB1 and ErbB2 Receptor Tyrosine Kinases
J.Mol.Biol., 2010
2MK9
DownloadVisualize
BU of 2mk9 by Molmil
Spatial structure of the dimeric transmembrane domain of Toll-like receptor 3
Descriptor: Toll-like receptor 3
Authors:Mineev, K.S, Goncharuk, S.A, Arseniev, A.S.
Deposit date:2014-02-04
Release date:2014-09-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Toll-like receptor 3 transmembrane domain is able to perform various homotypic interactions: An NMR structural study.
Febs Lett., 588, 2014
2MKA
DownloadVisualize
BU of 2mka by Molmil
Spatial structure of the Toll-like receptor 3 transmembrane domain in the trimeric state
Descriptor: Toll-like receptor 3
Authors:Mineev, K, Gonscharuk, S.A, Arseniev, A.S.
Deposit date:2014-02-04
Release date:2014-09-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Toll-like receptor 3 transmembrane domain is able to perform various homotypic interactions: An NMR structural study.
Febs Lett., 588, 2014
2M59
DownloadVisualize
BU of 2m59 by Molmil
Spatial structure of dimeric VEGFR2 membrane domain in DPC micelles
Descriptor: Vascular endothelial growth factor receptor 2
Authors:Mineev, K.S, Arseniev, A.S, Shulepko, M.A, Lyukmanova, E.N.
Deposit date:2013-02-19
Release date:2014-03-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and functional characterization of alternative transmembrane domain conformations in VEGF receptor 2 activation.
Structure, 22, 2014
7AVB
DownloadVisualize
BU of 7avb by Molmil
Solution structure of the fluorogen-activating protein FAST in the apo state
Descriptor: FAST
Authors:Mineev, K.S, Goncharuk, S.A, Baranov, M.S.
Deposit date:2020-11-05
Release date:2021-04-28
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:NanoFAST: structure-based design of a small fluorogen-activating protein with only 98 amino acids.
Chem Sci, 12, 2021
7AVA
DownloadVisualize
BU of 7ava by Molmil
Solution structure of the fluorogen-activating protein FAST in complex with the ligand N871b
Descriptor: (5~{Z})-5-[(2-methoxy-4-oxidanyl-phenyl)methylidene]-3-methyl-2-[(~{E})-2-pyridin-4-ylethenyl]imidazol-4-one, FAST
Authors:Mineev, K.S, Goncharuk, S.A, Baranov, M.S.
Deposit date:2020-11-05
Release date:2021-04-28
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:NanoFAST: structure-based design of a small fluorogen-activating protein with only 98 amino acids.
Chem Sci, 12, 2021
7AV6
DownloadVisualize
BU of 7av6 by Molmil
FAST in a domain-swapped dimer form
Descriptor: FORMIC ACID, Photoactive yellow protein
Authors:Bukhdruker, S, Remeeva, A, Ruchkin, D, Gorbachev, D, Povarova, N, Mineev, K, Goncharuk, S, Baranov, M, Mishin, A, Borshchevskiy, V.
Deposit date:2020-11-04
Release date:2021-06-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:NanoFAST: structure-based design of a small fluorogen-activating protein with only 98 amino acids.
Chem Sci, 12, 2021
7B3K
DownloadVisualize
BU of 7b3k by Molmil
Dynamic complex between all-D-enantiomeric peptide D3 with L723P mutant of amyloid precursor protein (APP) 672-726 fragment (amyloid beta 1-55)
Descriptor: D3 all D-enantimeric peptide, Isoform L-APP677 of Amyloid-beta precursor protein
Authors:Bocharov, E.V, Volynsky, P.E, Okhrimenko, I.S, Urban, A.S.
Deposit date:2020-12-01
Release date:2021-01-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:All - d - Enantiomeric Peptide D3 Designed for Alzheimer's Disease Treatment Dynamically Interacts with Membrane-Bound Amyloid-beta Precursors.
J.Med.Chem., 64, 2021
7B3J
DownloadVisualize
BU of 7b3j by Molmil
Dynamic complex between all-D-enantiomeric peptide D3 with wild-type amyloid precursor protein 672-726 fragment (amyloid beta 1-55)
Descriptor: D3 all D-enantimeric peptide, Isoform L-APP677 of Amyloid-beta precursor protein
Authors:Bocharov, E.V, Volynsky, P.E, Okhrimenko, I.S, Urban, A.S.
Deposit date:2020-12-01
Release date:2021-01-13
Last modified:2021-12-08
Method:SOLUTION NMR
Cite:All - d - Enantiomeric Peptide D3 Designed for Alzheimer's Disease Treatment Dynamically Interacts with Membrane-Bound Amyloid-beta Precursors.
J.Med.Chem., 64, 2021
7PVB
DownloadVisualize
BU of 7pvb by Molmil
Structure of Viscotoxin A3 from Viscum Album in the complex with DPC micelles
Descriptor: Viscotoxin-A3
Authors:Paramonov, A.S, Shenkarev, Z.O.
Deposit date:2021-10-01
Release date:2021-12-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Spatial structure and oligomerization of viscotoxin A3 in detergent micelles: Implication for mechanisms of ion channel formation and membrane lysis.
Biochem.Biophys.Res.Commun., 585, 2021
5T8A
DownloadVisualize
BU of 5t8a by Molmil
Recombinant cytotoxin-I from the venom of cobra N. oxiana
Descriptor: Cytotoxin 1
Authors:Dubovskii, P.V, Dubinnyi, M.A, Shulepko, M.A, Lyukmanova, E.N, Dolgikh, D.A, Kirpichnikov, M.P, Efremov, R.G.
Deposit date:2016-09-07
Release date:2017-09-20
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Structural and Dynamic "Portraits" of Recombinant and Native Cytotoxin I from Naja oxiana: How Close Are They?
Biochemistry, 56, 2017
6Z1Y
DownloadVisualize
BU of 6z1y by Molmil
Crystal structure of type-I ribosome-inactivating protein trichobakin (TBK)
Descriptor: SODIUM ION, Trichobakin
Authors:Boyko, K.M, Nikolaeva, A.Y, Britikov, V.V, Bocharov, E.V, Britikova, E.V, Le, T.B.T, Phan, C.V, Popov, V.O, Usanov, S.A.
Deposit date:2020-05-14
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of type-I ribosome-inactivating protein trichobakin (TBK)
To Be Published
7NUW
DownloadVisualize
BU of 7nuw by Molmil
Crystal structure of the TIR domain of human TLR1 (crystallised with Zn2+ ions)
Descriptor: Toll-like receptor 1
Authors:Vakhrameev, D.D, Luginina, A.P, Shevtsov, M.B, Lushpa, V.A, Mineev, K.S, Borshchevskiy, V.I.
Deposit date:2021-03-15
Release date:2021-08-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Modulation of Toll-like receptor 1 intracellular domain structure and activity by Zn 2+ ions.
Commun Biol, 4, 2021
7NUX
DownloadVisualize
BU of 7nux by Molmil
Crystal structure of the TIR domain of human TLR1 (crystallised without ZN2+ ions)
Descriptor: Toll-like receptor 1
Authors:Vakhrameev, D.D, Luginina, A.P, Shevtsov, M.B, Lushpa, V.A, Mineev, K.S, Borshchevskiy, V.I.
Deposit date:2021-03-15
Release date:2021-08-25
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Modulation of Toll-like receptor 1 intracellular domain structure and activity by Zn 2+ ions.
Commun Biol, 4, 2021
7NT7
DownloadVisualize
BU of 7nt7 by Molmil
Solution structure of toll like receptor 1 (TLR1) TIR domain
Descriptor: Toll-like receptor 1
Authors:Mineev, K.S, Lushpa, V.A, Goncharuk, M.V.
Deposit date:2021-03-09
Release date:2021-08-25
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Modulation of Toll-like receptor 1 intracellular domain structure and activity by Zn 2+ ions.
Commun Biol, 4, 2021
7O9U
DownloadVisualize
BU of 7o9u by Molmil
Solution structure of oxidized cytochrome c552 from Thioalkalivibrio paradoxus
Descriptor: Cytochrome c552, HEME C
Authors:Britikov, V.V, Britikova, E.V, Altukhov, D.A, Timofeev, V.I, Dergousova, N.I, Rakitina, T.V, Tikhonova, T.V, Usanov, S.A, Popov, V.O, Bocharov, E.V.
Deposit date:2021-04-17
Release date:2021-05-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Unusual Cytochrome c 552 from Thioalkalivibrio paradoxus : Solution NMR Structure and Interaction with Thiocyanate Dehydrogenase.
Int J Mol Sci, 23, 2022
7OXF
DownloadVisualize
BU of 7oxf by Molmil
Solution structure of bee apamin
Descriptor: Apamin
Authors:Mineev, K, Kuzmenkov, A, Vassilevski, A.
Deposit date:2021-06-22
Release date:2022-07-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Apamin structure and pharmacology revisited.
Front Pharmacol, 13, 2022
5LUE
DownloadVisualize
BU of 5lue by Molmil
Minor form of the recombinant cytotoxin-1 from N. oxiana
Descriptor: VC-1=CYTOTOXIN
Authors:Dubovskii, P.V, Dubinnyi, M.A, Shulepko, M.A, Lyukmanova, E.N, Dolgikh, D.A, Kirpichnikov, M.P, Efremov, R.G.
Deposit date:2016-09-08
Release date:2017-09-20
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Structural and Dynamic "Portraits" of Recombinant and Native Cytotoxin I from Naja oxiana: How Close Are They?
Biochemistry, 56, 2017

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon