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2M59

Spatial structure of dimeric VEGFR2 membrane domain in DPC micelles

Summary for 2M59
Entry DOI10.2210/pdb2m59/pdb
NMR InformationBMRB: 19041
DescriptorVascular endothelial growth factor receptor 2 (1 entity in total)
Functional Keywordsvegfr2, receptor tyrosine kinase, transferase
Biological sourceHomo sapiens (human)
Cellular locationCell junction . Isoform 1: Cell membrane; Single-pass type I membrane protein. Isoform 2: Secreted . Isoform 3: Secreted: P35968
Total number of polymer chains2
Total formula weight8262.13
Authors
Mineev, K.S.,Arseniev, A.S.,Shulepko, M.A.,Lyukmanova, E.N. (deposition date: 2013-02-19, release date: 2014-03-12, Last modification date: 2024-05-15)
Primary citationManni, S.,Mineev, K.S.,Usmanova, D.,Lyukmanova, E.N.,Shulepko, M.A.,Kirpichnikov, M.P.,Winter, J.,Matkovic, M.,Deupi, X.,Arseniev, A.S.,Ballmer-Hofer, K.
Structural and functional characterization of alternative transmembrane domain conformations in VEGF receptor 2 activation.
Structure, 22:1077-1089, 2014
Cited by
PubMed Abstract: Transmembrane signaling by receptor tyrosine kinases (RTKs) entails ligand-mediated dimerization and structural rearrangement of the extracellular domains. RTK activation also depends on the specific orientation of the transmembrane domain (TMD) helices, as suggested by pathogenic, constitutively active RTK mutants. Such mutant TMDs carry polar amino acids promoting stable transmembrane helix dimerization, which is essential for kinase activation. We investigated the effect of polar amino acids introduced into the TMD of vascular endothelial growth factor receptor 2, regulating blood vessel homeostasis. Two mutants showed constitutive kinase activity, suggesting that precise TMD orientation is mandatory for kinase activation. Nuclear magnetic resonance spectroscopy revealed that TMD helices in activated constructs were rotated by 180° relative to the interface of the wild-type conformation, confirming that ligand-mediated receptor activation indeed results from transmembrane helix rearrangement. A molecular dynamics simulation confirmed the transmembrane helix arrangement of wild-type and mutant TMDs revealed by nuclear magnetic resonance spectroscopy.
PubMed: 24980797
DOI: 10.1016/j.str.2014.05.010
PDB entries with the same primary citation
Experimental method
SOLUTION NMR
Structure validation

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