Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4IK3
DownloadVisualize
BU of 4ik3 by Molmil
High resolution structure of GCaMP3 at pH 8.5
Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-01-29
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.007 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
4IK9
DownloadVisualize
BU of 4ik9 by Molmil
High resolution structure of GCaMP3 dimer form 2 at pH 7.5
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, RCaMP, ...
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-01-29
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
4IK8
DownloadVisualize
BU of 4ik8 by Molmil
High resolution structure of GCaMP3 dimer form 1 at pH 7.5
Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-02-05
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
4IK4
DownloadVisualize
BU of 4ik4 by Molmil
High resolution structure of GCaMP3 at pH 5.0
Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-02-05
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
6KNM
DownloadVisualize
BU of 6knm by Molmil
Apelin receptor in complex with single domain antibody
Descriptor: Apelin receptor,Rubredoxin,Apelin receptor, Single domain antibody JN241, ZINC ION
Authors:Ma, Y.B, Ding, Y, Song, X, Ma, X, Li, X, Zhang, N, Song, Y, Sun, Y, Shen, Y, Zhong, W, Hu, L.A, Ma, Y.L, Zhang, M.Y.
Deposit date:2019-08-06
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure-guided discovery of a single-domain antibody agonist against human apelin receptor.
Sci Adv, 6, 2020
7WJR
DownloadVisualize
BU of 7wjr by Molmil
Crystal structure of dihydroxybenzoate decarboxylase mutant A63S from Aspergillus oryzae in complex with catechol
Descriptor: 2,3-dihydroxybenzoate decarboxylase, CATECHOL, MAGNESIUM ION
Authors:Yan, F, Song, X.
Deposit date:2022-01-07
Release date:2023-01-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular mechanism of reversible decarboxylase with efficient CO2 fixation
To Be Published
4I1L
DownloadVisualize
BU of 4i1l by Molmil
Structural and Biological Features of FOXP3 Dimerization Relevant to Regulatory T Cell Function
Descriptor: ACETATE ION, Forkhead box protein P3, MAGNESIUM ION, ...
Authors:Song, X.M, Greene, M.I, Zhou, Z.C.
Deposit date:2012-11-21
Release date:2012-12-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and biological features of FOXP3 dimerization relevant to regulatory T cell function.
Cell Rep, 1, 2012
7DYS
DownloadVisualize
BU of 7dys by Molmil
CryoEM structure of full length mouse TRPML2
Descriptor: Mucolipin-2
Authors:Song, X.J, Li, J, Duan, J.J, Zhang, J.
Deposit date:2021-01-22
Release date:2022-03-23
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Cryo-EM structure of mouse TRPML2 in lipid nanodiscs.
J.Biol.Chem., 298, 2022
8IMS
DownloadVisualize
BU of 8ims by Molmil
Crystal structure of TRAF7 coiled-coil domain
Descriptor: E3 ubiquitin-protein ligase TRAF7
Authors:Hu, R, Lin, L, Lu, Q.
Deposit date:2023-03-07
Release date:2024-01-24
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The structure of TRAF7 coiled-coil trimer provides insight into its function in zebrafish embryonic development.
J Mol Cell Biol, 16, 2024
6IH4
DownloadVisualize
BU of 6ih4 by Molmil
Crystal structure of Phosphite Dehydrogenase mutant I151R/P176E from Ralstonia sp. 4506
Descriptor: Phosphite dehydrogenase
Authors:Song, X, Feng, Y, Liu, Y, Zhao, Z.
Deposit date:2018-09-28
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Insights into Phosphite Dehydrogenase Variants Favoring a Non-natural Redox Cofactor
Acs Catalysis, 9, 2019
6IH8
DownloadVisualize
BU of 6ih8 by Molmil
Crystal structure of Phosphite Dehydrogenase mutant I151R/P176R/M207A from Ralstonia sp. 4506
Descriptor: Phosphite dehydrogenase
Authors:Song, X, Feng, Y, Liu, Y, Zhao, Z.
Deposit date:2018-09-28
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Insights into Phosphite Dehydrogenase Variants Favoring a Non-natural Redox Cofactor
Acs Catalysis, 9, 2019
6IH6
DownloadVisualize
BU of 6ih6 by Molmil
Phosphite Dehydrogenase mutant I151R/P176R/M207A from Ralstonia sp. 4506 in complex with non-natural cofactor Nicotinamide Cytosine dinucleotide
Descriptor: Phosphite dehydrogenase, [[(2S,3S,4R,5S)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3S,4R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
Authors:Song, X, Feng, Y, Liu, Y, Zhao, Z.
Deposit date:2018-09-28
Release date:2019-03-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.491 Å)
Cite:Structural Insights into Phosphite Dehydrogenase Variants Favoring a Non-natural Redox Cofactor
Acs Catalysis, 9, 2019
6IH5
DownloadVisualize
BU of 6ih5 by Molmil
Crystal structure of Phosphite Dehydrogenase mutant I151R/P176E from Ralstonia sp. 4506 in complex with non-natural cofactor Nicotinamide Cytosine dinucleotide
Descriptor: Phosphite dehydrogenase, [[(2S,3S,4R,5S)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3S,4R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
Authors:Song, X, Feng, Y, Liu, Y, Zhao, Z.
Deposit date:2018-09-28
Release date:2019-03-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.468 Å)
Cite:Structural Insights into Phosphite Dehydrogenase Variants Favoring a Non-natural Redox Cofactor
Acs Catalysis, 9, 2019
6IH2
DownloadVisualize
BU of 6ih2 by Molmil
Crystal structure of Phosphite Dehydrogenase from Ralstonia sp. 4506
Descriptor: Phosphite dehydrogenase
Authors:Song, X, Zhao, Z, Liu, Y, Feng, Y.
Deposit date:2018-09-28
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.048 Å)
Cite:Structural Insights into Phosphite Dehydrogenase Variants Favoring a Non-natural Redox Cofactor
Acs Catalysis, 9, 2019
6IH3
DownloadVisualize
BU of 6ih3 by Molmil
Crystal structure of Phosphite Dehydrogenase from Ralstonia sp. 4506 in complex with non-natural cofactor Nicotinamide Cytosine Dinucleotide
Descriptor: Phosphite dehydrogenase, [[(2S,3S,4R,5S)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3S,4R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
Authors:Song, X, Feng, Y, Zhao, Z, Liu, Y.
Deposit date:2018-09-28
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.942 Å)
Cite:Structural Insights into Phosphite Dehydrogenase Variants Favoring a Non-natural Redox Cofactor
Acs Catalysis, 9, 2019
3VF6
DownloadVisualize
BU of 3vf6 by Molmil
Glucokinase in complex with glucose and activator
Descriptor: 6-({(2S)-3-cyclopentyl-2-[4-(trifluoromethyl)-1H-imidazol-1-yl]propanoyl}amino)pyridine-3-carboxylic acid, Glucokinase, SODIUM ION, ...
Authors:Liu, S.
Deposit date:2012-01-09
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Insights into Mechanism of Glucokinase Activation: OBSERVATION OF MULTIPLE DISTINCT PROTEIN CONFORMATIONS.
J.Biol.Chem., 287, 2012
3VEY
DownloadVisualize
BU of 3vey by Molmil
glucokinase in complex with glucose and ATPgS
Descriptor: 6-methoxy-N-(1-methyl-1H-pyrazol-3-yl)quinazolin-4-amine, Glucokinase, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Liu, S.
Deposit date:2012-01-09
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Insights into Mechanism of Glucokinase Activation: OBSERVATION OF MULTIPLE DISTINCT PROTEIN CONFORMATIONS.
J.Biol.Chem., 287, 2012
6X5Y
DownloadVisualize
BU of 6x5y by Molmil
IDO1 in complex with compound 4
Descriptor: 4-fluoro-N-{1-[5-(2-methylpyrimidin-4-yl)-5,6,7,8-tetrahydro-1,5-naphthyridin-2-yl]cyclopropyl}benzamide, Indoleamine 2,3-dioxygenase 1
Authors:Lesburg, C.A, Lammens, A.
Deposit date:2020-05-27
Release date:2021-06-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Utilization of MetID and Structural Data to Guide Placement of Spiro and Fused Cyclopropyl Groups for the Synthesis of Low Dose IDO1 Inhibitors
To Be Published
5MH2
DownloadVisualize
BU of 5mh2 by Molmil
Crystal structure of a DM9 domain containing protein from Crassostrea gigas with D22A mutation
Descriptor: CHLORIDE ION, GLYCEROL, Natterin-3
Authors:Weinert, T, Warkentin, E, Peng, G.
Deposit date:2016-11-22
Release date:2017-12-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:DM9 Domain Containing Protein Functions As a Pattern Recognition Receptor with Broad Microbial Recognition Spectrum.
Front Immunol, 8, 2017
5MH0
DownloadVisualize
BU of 5mh0 by Molmil
Crystal structure of a DM9 domain containing protein from Crassostrea gigas
Descriptor: GLYCEROL, Natterin-3
Authors:Weinert, T, Warkentin, E, Pang, G.
Deposit date:2016-11-22
Release date:2017-12-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:DM9 Domain Containing Protein Functions As a Pattern Recognition Receptor with Broad Microbial Recognition Spectrum.
Front Immunol, 8, 2017
5MH1
DownloadVisualize
BU of 5mh1 by Molmil
Crystal structure of a DM9 domain containing protein from Crassostrea gigas
Descriptor: GLYCEROL, MAGNESIUM ION, Natterin-3, ...
Authors:Weinert, T, Warkentin, E, Pang, G.
Deposit date:2016-11-22
Release date:2017-12-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:DM9 Domain Containing Protein Functions As a Pattern Recognition Receptor with Broad Microbial Recognition Spectrum.
Front Immunol, 8, 2017
5MH3
DownloadVisualize
BU of 5mh3 by Molmil
Crystal structure of a DM9 domain containing protein from Crassostrea gigas with K43A mutation
Descriptor: GLYCEROL, Natterin-3
Authors:Weinert, T, Warkentin, E, Pang, G.
Deposit date:2016-11-22
Release date:2017-12-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:DM9 Domain Containing Protein Functions As a Pattern Recognition Receptor with Broad Microbial Recognition Spectrum.
Front Immunol, 8, 2017
4W8E
DownloadVisualize
BU of 4w8e by Molmil
Structure of MST3 with a pyrrolopyrimidine inhibitor (PF-06645342)
Descriptor: 3-{4-[(2R)-2-(5-methyl-1,2,4-oxadiazol-3-yl)morpholin-4-yl]-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile, Serine/threonine-protein kinase 24 36 kDa subunit
Authors:Jasti, J, Song, X, Griffor, M, Kurumbail, R.G.
Deposit date:2014-08-24
Release date:2015-03-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Discovery and preclinical profiling of 3-[4-(morpholin-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl]benzonitrile (PF-06447475), a highly potent, selective, brain penetrant, and in vivo active LRRK2 kinase inhibitor.
J.Med.Chem., 58, 2015
4W8D
DownloadVisualize
BU of 4w8d by Molmil
Crystal structure of MST3 with a pyrrolopyrimidine inhibitor (PF-06454589).
Descriptor: 5-(1-methyl-1H-pyrazol-4-yl)-4-(morpholin-4-yl)-7H-pyrrolo[2,3-d]pyrimidine, Serine/threonine-protein kinase 24 36 kDa subunit
Authors:Jasti, J, Song, X, Griffor, M, Kurumbail, R.G.
Deposit date:2014-08-24
Release date:2015-03-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Discovery and preclinical profiling of 3-[4-(morpholin-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl]benzonitrile (PF-06447475), a highly potent, selective, brain penetrant, and in vivo active LRRK2 kinase inhibitor.
J.Med.Chem., 58, 2015
7YUK
DownloadVisualize
BU of 7yuk by Molmil
Complex structure of BANP BEN domain bound to DNA
Descriptor: DNA (5'-D(*CP*TP*CP*TP*CP*GP*CP*GP*AP*GP*AP*G)-3'), GLYCEROL, Protein BANP
Authors:Zhang, J, Xiao, Y.Q, Chen, Y.X, Liu, K, Min, J.R.
Deposit date:2022-08-17
Release date:2023-04-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structural insights into DNA recognition by the BEN domain of the transcription factor BANP.
J.Biol.Chem., 299, 2023

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon