Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6M4N
DownloadVisualize
BU of 6m4n by Molmil
Cryo-EM structure of the dimeric SPT-ORMDL3 complex
Descriptor: ORM1-like protein 3, PYRIDOXAL-5'-PHOSPHATE, Serine palmitoyltransferase 1, ...
Authors:Li, S.S, Xie, T, Wang, L, Gong, X.
Deposit date:2020-03-07
Release date:2021-02-10
Last modified:2021-03-24
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural insights into the assembly and substrate selectivity of human SPT-ORMDL3 complex.
Nat.Struct.Mol.Biol., 28, 2021
6VNA
DownloadVisualize
BU of 6vna by Molmil
Pden_1323
Descriptor: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
Authors:Isiorho, E.A, Mansoorabadi, S.O.
Deposit date:2020-01-29
Release date:2021-02-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A noncanonical heme oxygenase specific for the degradation of c-type heme.
J.Biol.Chem., 296, 2021
8T8E
DownloadVisualize
BU of 8t8e by Molmil
cryoEM structure of Smc5/6 5mer
Descriptor: DNA repair protein KRE29, Non-structural maintenance of chromosome element 5, Structural maintenance of chromosomes protein 6
Authors:Yu, Y, Patel, D.J.
Deposit date:2023-06-22
Release date:2023-11-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular basis for Nse5-6 mediated regulation of Smc5/6 functions.
Proc.Natl.Acad.Sci.USA, 120, 2023
8T8F
DownloadVisualize
BU of 8t8f by Molmil
Smc5/6 8mer
Descriptor: DNA repair protein KRE29, Non-structural maintenance of chromosome element 4, Non-structural maintenance of chromosome element 5, ...
Authors:Yu, Y, Patel, D.J.
Deposit date:2023-06-22
Release date:2023-11-15
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Molecular basis for Nse5-6 mediated regulation of Smc5/6 functions.
Proc.Natl.Acad.Sci.USA, 120, 2023
7CQI
DownloadVisualize
BU of 7cqi by Molmil
Cryo-EM structure of the substrate-bound SPT-ORMDL3 complex
Descriptor: ORM1-like protein 3, Serine palmitoyltransferase 1, Serine palmitoyltransferase 2, ...
Authors:Li, S.S, Xie, T, Wang, L, Gong, X.
Deposit date:2020-08-11
Release date:2021-02-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into the assembly and substrate selectivity of human SPT-ORMDL3 complex.
Nat.Struct.Mol.Biol., 28, 2021
7CQK
DownloadVisualize
BU of 7cqk by Molmil
Cryo-EM structure of the substrate-bound SPT-ORMDL3 complex
Descriptor: ORM1-like protein 3, Serine palmitoyltransferase 1, Serine palmitoyltransferase 2, ...
Authors:Li, S.S, Xie, T, Wang, L, Gong, X.
Deposit date:2020-08-11
Release date:2021-02-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insights into the assembly and substrate selectivity of human SPT-ORMDL3 complex.
Nat.Struct.Mol.Biol., 28, 2021
7EHL
DownloadVisualize
BU of 7ehl by Molmil
Cryo-EM structure of human ABCB8 transporter in nucleotide binding state
Descriptor: CHOLESTEROL, MAGNESIUM ION, Mitochondrial potassium channel ATP-binding subunit, ...
Authors:Li, S.J, Yang, X, Shen, Y.Q.
Deposit date:2021-03-29
Release date:2021-05-05
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY
Cite:Cryo-EM structure of human ABCB8 transporter in nucleotide binding state.
Biochem.Biophys.Res.Commun., 557, 2021
1C40
DownloadVisualize
BU of 1c40 by Molmil
BAR-HEADED GOOSE HEMOGLOBIN (AQUOMET FORM)
Descriptor: PROTEIN (HEMOGLOBIN (ALPHA CHAIN)), PROTEIN (HEMOGLOBIN (BETA CHAIN)), PROTOPORPHYRIN IX CONTAINING FE
Authors:Li, S, Liu, X, Jing, H, Hua, Z, Zhang, R, Lu, G.
Deposit date:1999-08-03
Release date:1999-08-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Avian haemoglobins and structural basis of high affinity for oxygen: structure of bar-headed goose aquomet haemoglobin.
Acta Crystallogr.,Sect.D, 57, 2001
7EUY
DownloadVisualize
BU of 7euy by Molmil
Crystal structure of the Lon-like protease MtaLonC with D582A mutation in complex with substrate polypeptide
Descriptor: ALA-PRO-GLU-ALA-VAL, Endopeptidase La, PHOSPHATE ION
Authors:Hsieh, K.Y, Kuo, C.I, Su, S.C, Huang, K.F, Chang, C.I.
Deposit date:2021-05-19
Release date:2021-11-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Processive cleavage of substrate at individual proteolytic active sites of the Lon protease complex.
Sci Adv, 7, 2021
7EV4
DownloadVisualize
BU of 7ev4 by Molmil
Crystal structure of the Lon-like protease MtaLonC with S582A mutation in complex with F-b20-Q
Descriptor: Endopeptidase La, F-b20-Q peptide {ortho-aminobenzoic acid (Abz)- QLRSLNGEWRFAWFPAPEAV[Tyr(3-NO2)]A}, PHOSPHATE ION
Authors:Hsieh, K.Y, Kuo, C.I, Su, S.C, Huang, K.F, Chang, C.I.
Deposit date:2021-05-20
Release date:2021-11-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Processive cleavage of substrate at individual proteolytic active sites of the Lon protease complex.
Sci Adv, 7, 2021
7EV6
DownloadVisualize
BU of 7ev6 by Molmil
Crystal structure of the Lon-like protease MtaLonC with D581A mutation in complex with F-b20-Q
Descriptor: Endopeptidase La, F-b20-Q peptide {ortho-aminobenzoic acid (Abz)- QLRSLNGEWRFAWFPAPEAV[Tyr(3-NO2)]A}, PHOSPHATE ION
Authors:Hsieh, K.Y, Kuo, C.I, Su, S.C, Huang, K.F, Chang, C.I.
Deposit date:2021-05-20
Release date:2021-11-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Processive cleavage of substrate at individual proteolytic active sites of the Lon protease complex.
Sci Adv, 7, 2021
7EUX
DownloadVisualize
BU of 7eux by Molmil
Crystal structure of the Lon-like protease MtaLonC with D581A mutation in complex with substrate polypeptide
Descriptor: ALA-PRO-GLU-ALA-VAL, Endopeptidase La, PHOSPHATE ION
Authors:Hsieh, K.Y, Kuo, C.I, Su, S.C, Huang, K.F, Chang, C.I.
Deposit date:2021-05-19
Release date:2021-11-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Processive cleavage of substrate at individual proteolytic active sites of the Lon protease complex.
Sci Adv, 7, 2021
7ER2
DownloadVisualize
BU of 7er2 by Molmil
Crystal structure of EGFR 696-1022 T790M/C797S in complex with LS_2_40
Descriptor: 5-chloranyl-N2-[3-chloranyl-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]-N4-(2-dimethylphosphorylphenyl)pyrimidine-2,4-diamine, Epidermal growth factor receptor
Authors:Zhu, S.J, Yun, C.H.
Deposit date:2021-05-05
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.662 Å)
Cite:Optimization of Brigatinib as New Wild-Type Sparing Inhibitors of EGFR T790M/C797S Mutants.
Acs Med.Chem.Lett., 13, 2022
4U6H
DownloadVisualize
BU of 4u6h by Molmil
Vaccinia L1/M12B9-Fab complex
Descriptor: Heavy chain of murine anti-vaccinia L1 IgG2a antibody M12B9, Light chain of murine anti-vaccinia L1 IgG2a antibody M12B9, Protein L1
Authors:Matho, M.H, Schlossman, A, Zajonc, D.M.
Deposit date:2014-07-29
Release date:2014-08-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Potent neutralization of vaccinia virus by divergent murine antibodies targeting a common site of vulnerability in l1 protein.
J.Virol., 88, 2014
5HZG
DownloadVisualize
BU of 5hzg by Molmil
The crystal structure of the strigolactone-induced AtD14-D3-ASK1 complex
Descriptor: (2Z)-2-methylbut-2-ene-1,4-diol, F-box/LRR-repeat MAX2 homolog, SKP1-like protein 1A, ...
Authors:Yao, R.F, Ming, Z.H, Yan, L.M, Rao, Z.H, Lou, Z.Y, Xie, D.X.
Deposit date:2016-02-02
Release date:2016-08-03
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:DWARF14 is a non-canonical hormone receptor for strigolactone
Nature, 536, 2016
5HYW
DownloadVisualize
BU of 5hyw by Molmil
The crystal structure of the D3-ASK1 complex
Descriptor: F-box/LRR-repeat MAX2 homolog, SKP1-like protein 1A
Authors:Yao, R.F, Ming, Z.H, Yan, L.M, Rao, Z.H, Lou, Z.Y, Xie, D.X.
Deposit date:2016-02-02
Release date:2016-08-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:DWARF14 is a non-canonical hormone receptor for strigolactone
Nature, 536, 2016
7YSX
DownloadVisualize
BU of 7ysx by Molmil
Crystal structure of PDE4D complexed with licoisoflavone A
Descriptor: 1,2-ETHANEDIOL, 3-[3-(3-methylbut-2-enyl)-2,4-bis(oxidanyl)phenyl]-5,7-bis(oxidanyl)chromen-4-one, MAGNESIUM ION, ...
Authors:Liu, J.Y, Li, M.J, Xu, Y.C.
Deposit date:2022-08-13
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Bioactive compounds from Huashi Baidu decoction possess both antiviral and anti-inflammatory effects against COVID-19.
Proc.Natl.Acad.Sci.USA, 120, 2023
7YQF
DownloadVisualize
BU of 7yqf by Molmil
Crystal structure of PDE4D complexed with glycyrrhisoflavone
Descriptor: 1,2-ETHANEDIOL, 3-[3-(3-methylbut-2-enyl)-4,5-bis(oxidanyl)phenyl]-5,7-bis(oxidanyl)chromen-4-one, MAGNESIUM ION, ...
Authors:Liu, J.Y, Li, M.J, Xu, Y.C.
Deposit date:2022-08-06
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Bioactive compounds from Huashi Baidu decoction possess both antiviral and anti-inflammatory effects against COVID-19.
Proc.Natl.Acad.Sci.USA, 120, 2023
4KJU
DownloadVisualize
BU of 4kju by Molmil
Crystal structure of XIAP-Bir2 with a bound benzodiazepinone inhibitor.
Descriptor: E3 ubiquitin-protein ligase XIAP, N-{(3S)-5-(4-aminobenzoyl)-1-[(2-methoxynaphthalen-1-yl)methyl]-2-oxo-2,3,4,5-tetrahydro-1H-1,5-benzodiazepin-3-yl}-N~2~-methyl-L-alaninamide, ZINC ION
Authors:Lukacs, C.M, Janson, C.A.
Deposit date:2013-05-03
Release date:2013-11-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Optimization of Benzodiazepinones as Selective Inhibitors of the X-Linked Inhibitor of Apoptosis Protein (XIAP) Second Baculovirus IAP Repeat (BIR2) Domain.
J.Med.Chem., 56, 2013
4KJV
DownloadVisualize
BU of 4kjv by Molmil
Crystal structure of XIAP-Bir2 with a bound spirocyclic benzoxazepinone inhibitor.
Descriptor: 6-methoxy-5-({(3S)-3-[(N-methyl-L-alanyl)amino]-4-oxo-2',3,3',4,5',6'-hexahydro-5H-spiro[1,5-benzoxazepine-2,4'-pyran]-5-yl}methyl)naphthalene-2-carboxylic acid, E3 ubiquitin-protein ligase XIAP, ZINC ION
Authors:Lukacs, C.M, Janson, C.A.
Deposit date:2013-05-03
Release date:2013-11-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Optimization of Benzodiazepinones as Selective Inhibitors of the X-Linked Inhibitor of Apoptosis Protein (XIAP) Second Baculovirus IAP Repeat (BIR2) Domain.
J.Med.Chem., 56, 2013
6AJ2
DownloadVisualize
BU of 6aj2 by Molmil
The structure of ICAM-5 triggered Enterovirus D68 virus A-particle
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Zheng, Q.B, Zhu, R, Xu, L.F, He, M.Z, Yan, X.D, Cheng, T, Li, S.W.
Deposit date:2018-08-26
Release date:2018-11-07
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Atomic structures of enterovirus D68 in complex with two monoclonal antibodies define distinct mechanisms of viral neutralization
Nat Microbiol, 4, 2019
7SSM
DownloadVisualize
BU of 7ssm by Molmil
Crystal structure of human STING R232 in complex with compound 11
Descriptor: 2-({[(8R)-pyrazolo[1,5-a]pyrimidine-3-carbonyl]amino}methyl)-1-benzofuran-7-carboxylic acid, Stimulator of interferon genes protein
Authors:Sack, J.S, Critton, D.A.
Deposit date:2021-11-11
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Discovery of Non-Nucleotide Small-Molecule STING Agonists via Chemotype Hybridization.
J.Med.Chem., 65, 2022
4K3V
DownloadVisualize
BU of 4k3v by Molmil
Structure of Staphylococcus aureus MntC
Descriptor: ABC superfamily ATP binding cassette transporter, binding protein, MANGANESE (II) ION
Authors:Parris, K.D, Mosyak, L.
Deposit date:2013-04-11
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-Dimensional Structure and Biophysical Characterization of Staphylococcus aureus Cell Surface Antigen-Manganese Transporter MntC.
J.Mol.Biol., 425, 2013
6QGI
DownloadVisualize
BU of 6qgi by Molmil
Crystal structure of VP5 from Haloarchaeal pleomorphic virus 2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, VP5
Authors:El Omari, K, Walter, T.S, Harlos, K, Grimes, J.M, Stuart, D.I, Roine, E.
Deposit date:2019-01-11
Release date:2019-02-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:The structure of a prokaryotic viral envelope protein expands the landscape of membrane fusion proteins.
Nat Commun, 10, 2019
6QGL
DownloadVisualize
BU of 6qgl by Molmil
Crystal structure of VP5 from Haloarchaeal pleomorphic virus 6
Descriptor: BROMIDE ION, VP5
Authors:El Omari, K, Walter, T.S, Harlos, K, Grimes, J.M, Stuart, D.I, Roine, E.
Deposit date:2019-01-11
Release date:2019-02-27
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:The structure of a prokaryotic viral envelope protein expands the landscape of membrane fusion proteins.
Nat Commun, 10, 2019

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon