Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8ILS
DownloadVisualize
BU of 8ils by Molmil
Cryo-EM structure of PI3Kalpha in complex with compound 17
Descriptor: N-[(2R)-1-(ethylamino)-1-oxidanylidene-3-[4-(2-quinoxalin-6-ylethynyl)phenyl]propan-2-yl]-2,3-dimethyl-quinoxaline-6-carboxamide, Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Zhou, Q, Liu, X, Neri, D, Li, W, Favalli, N, Bassi, G, Yang, S, Yang, D, Vogt, P.K, Wang, M.-W.
Deposit date:2023-03-04
Release date:2023-09-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural insights into the interaction of three Y-shaped ligands with PI3K alpha.
Proc.Natl.Acad.Sci.USA, 120, 2023
8ILR
DownloadVisualize
BU of 8ilr by Molmil
Cryo-EM structure of PI3Kalpha in complex with compound 16
Descriptor: N-[(2S)-1-(ethylamino)-1-oxidanylidene-3-[4-(2-quinoxalin-6-ylethynyl)phenyl]propan-2-yl]-2,3-dimethyl-quinoxaline-6-carboxamide, Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Zhou, Q, Liu, X, Neri, D, Li, W, Favalli, N, Bassi, G, Yang, S, Yang, D, Vogt, P.K, Wang, M.-W.
Deposit date:2023-03-04
Release date:2023-08-30
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Structural insights into the interaction of three Y-shaped ligands with PI3K alpha.
Proc.Natl.Acad.Sci.USA, 120, 2023
9LK5
DownloadVisualize
BU of 9lk5 by Molmil
The structure of Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Zhou, Q, Caferri, R, Shan, J.Y, Amelii, A, Bassi, R, Liu, Z.F.
Deposit date:2025-01-16
Release date:2025-06-18
Method:ELECTRON MICROSCOPY (3 Å)
Cite:A stress-induced paralog of Lhcb4 controls the photosystem II functional architecture in Arabidopsis thaliana
To Be Published
9LK4
DownloadVisualize
BU of 9lk4 by Molmil
Cryo-EM structure of Lhcb4.1-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Zhou, Q, Caferri, R, Shan, J.Y, Amelii, A, Bassi, R, Liu, Z.F.
Deposit date:2025-01-16
Release date:2025-06-18
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A stress-induced paralog of Lhcb4 controls the photosystem II functional architecture in Arabidopsis thaliana
To Be Published
6WVW
DownloadVisualize
BU of 6wvw by Molmil
Crystal structure of the R59P-SNAP25 containing SNARE complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Synaptosomal-associated protein 25, ...
Authors:Zhou, Q, White, K.I, Brunger, A.T.
Deposit date:2020-05-07
Release date:2021-03-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Role of Aberrant Spontaneous Neurotransmission in SNAP25-Associated Encephalopathies.
Neuron, 109, 2021
1TYZ
DownloadVisualize
BU of 1tyz by Molmil
Crystal structure of 1-Aminocyclopropane-1-carboyxlate Deaminase from Pseudomonas
Descriptor: 1-aminocyclopropane-1-carboxylate deaminase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION
Authors:Karthikeyan, S, Zhou, Q, Zhao, Z, Kao, C.L, Tao, Z, Robinson, H, Liu, H.W, Zhang, H.
Deposit date:2004-07-08
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes:Insight into the mechanism of unique pyrodoxial-5'-phosphate dependent cyclopropane ring opening reaction
Biochemistry, 43, 2004
1TZK
DownloadVisualize
BU of 1tzk by Molmil
Crystal structure of 1-aminocyclopropane-1-carboxylate-deaminase complexed with alpha-keto-butyrate
Descriptor: 1-aminocyclopropane-1-carboxylate deaminase, 2-KETOBUTYRIC ACID, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Karthikeyan, S, Zhou, Q, Zhao, Z, Kao, C.L, Tao, Z, Robinson, H, Liu, H.W, Zhang, H.
Deposit date:2004-07-10
Release date:2004-11-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction
Biochemistry, 43, 2004
1TZM
DownloadVisualize
BU of 1tzm by Molmil
Crystal structure of ACC deaminase complexed with substrate analog b-chloro-D-alanine
Descriptor: 1-aminocyclopropane-1-carboxylate deaminase, 3-chloro-D-alanine, AMINO-ACRYLATE, ...
Authors:Karthikeyan, S, Zhou, Q, Zhao, Z, Kao, C.L, Tao, Z, Robinson, H, Liu, H.W, Zhang, H.
Deposit date:2004-07-10
Release date:2004-11-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction
Biochemistry, 43, 2004
1TZJ
DownloadVisualize
BU of 1tzj by Molmil
Crystal Structure of 1-aminocyclopropane-1-carboxylate deaminase complexed with d-vinyl glycine
Descriptor: 1-aminocyclopropane-1-carboxylate deaminase, D-VINYLGLYCINE, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Karthikeyan, S, Zhou, Q, Zhao, Z, Kao, C.L, Tao, Z, Robinson, H, Liu, H.W, Zhang, H.
Deposit date:2004-07-10
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction
Biochemistry, 43, 2004
1TZ2
DownloadVisualize
BU of 1tz2 by Molmil
Crystal structure of 1-aminocyclopropane-1-carboyxlate deaminase complexed with ACC
Descriptor: 1-AMINOCYCLOPROPANECARBOXYLIC ACID, 1-aminocyclopropane-1-carboxylate deaminase, PYRIDOXAL-5'-PHOSPHATE
Authors:Karthikeyan, S, Zhou, Q, Zhao, Z, Kao, C.L, Tao, Z, Robinson, H, Liu, H.W, Zhang, H.
Deposit date:2004-07-09
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction
Biochemistry, 43, 2004
3JUE
DownloadVisualize
BU of 3jue by Molmil
Crystal Structure of ArfGAP and ANK repeat domain of ACAP1
Descriptor: ARFGAP with coiled-coil, ANK repeat and PH domain-containing protein 1, SULFATE ION, ...
Authors:Pang, X, Zhang, K, Ma, J, Zhou, Q, Sun, F.
Deposit date:2009-09-15
Release date:2010-09-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanistic insights into regulated cargo binding by ACAP1 protein
J.Biol.Chem., 287, 2012
2B34
DownloadVisualize
BU of 2b34 by Molmil
Structure of MAR1 Ribonuclease from Caenorhabditis elegans
Descriptor: MAR1 Ribonuclease
Authors:Schormann, N, Karpova, E, Li, S, Symersky, J, Zhang, Y, Lu, S, Zhou, Q, Lin, G, Cao, Z, Luo, M, Qiu, S, Luan, C.-H, Luo, D, Huang, W, Shang, Q, McKinstry, A, An, J, Tsao, J, Carson, M, Stinnett, M, Chen, Y, Johnson, D, Gary, R, Arabshahi, A, Bunzel, R, Bray, T, DeLucas, L, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2005-09-19
Release date:2005-09-27
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.141 Å)
Cite:Structure of MAR1 Ribonuclease from Caenorhabditis elegans
To be Published
3A2A
DownloadVisualize
BU of 3a2a by Molmil
The structure of the carboxyl-terminal domain of the human voltage-gated proton channel Hv1
Descriptor: CHLORIDE ION, Voltage-gated hydrogen channel 1
Authors:Li, S.J, Unno, H, Zhou, Q, Zhao, Q, Zhai, Y, Sun, F.
Deposit date:2009-05-08
Release date:2010-02-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:The role and structure of the carboxyl-terminal domain of the human voltage-gated proton channel Hv1.
J.Biol.Chem., 285, 2010
3JD8
DownloadVisualize
BU of 3jd8 by Molmil
cryo-EM structure of the full-length human NPC1 at 4.4 angstrom
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Gong, X, Qian, H.W, Zhou, X.H, Wu, J.P, Zhou, Q, Yan, N.
Deposit date:2016-05-01
Release date:2016-06-01
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.43 Å)
Cite:The structure of Niemann-Pick C1 protein
To Be Published
5KJ7
DownloadVisualize
BU of 5kj7 by Molmil
Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form) - from XFEL diffraction
Descriptor: CALCIUM ION, Synaptosomal-associated protein 25, Synaptotagmin-1, ...
Authors:Lyubimov, A.Y, Uervirojnangkoorn, M, Zhou, Q, Zhao, M, Sauter, N.K, Brewster, A.S, Weis, W.I, Brunger, A.T.
Deposit date:2016-06-17
Release date:2016-10-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex.
Elife, 5, 2016
5KJ8
DownloadVisualize
BU of 5kj8 by Molmil
Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form) - from synchrotron diffraction
Descriptor: CALCIUM ION, Synaptosomal-associated protein 25, Synaptotagmin-1, ...
Authors:Lyubimov, A.Y, Uervirojnangkoorn, M, Zhou, Q, Zhao, M, Sauter, N.K, Brewster, A.S, Weis, W.I, Brunger, A.T.
Deposit date:2016-06-17
Release date:2016-10-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex.
Elife, 5, 2016
6LID
DownloadVisualize
BU of 6lid by Molmil
Heteromeric amino acid transporter b0,+AT-rBAT complex
Descriptor: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Yan, R.H, Li, Y.N, Lei, J.L, Zhou, Q.
Deposit date:2019-12-10
Release date:2020-04-29
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structure of the human heteromeric amino acid transporter b0,+AT-rBAT.
Sci Adv, 6, 2020
6LI9
DownloadVisualize
BU of 6li9 by Molmil
Heteromeric amino acid transporter b0,+AT-rBAT complex bound with Arginine
Descriptor: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ARGININE, ...
Authors:Yan, R.H, Li, Y.N, Lei, J.L, Zhou, Q.
Deposit date:2019-12-10
Release date:2020-04-29
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Cryo-EM structure of the human heteromeric amino acid transporter b0,+AT-rBAT.
Sci Adv, 6, 2020
1F0C
DownloadVisualize
BU of 1f0c by Molmil
STRUCTURE OF THE VIRAL SERPIN CRMA
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ICE INHIBITOR
Authors:Renatus, M, Zhou, Q, Stennicke, H.R, Snipas, S.J, Turk, D, Bankston, L.A, Liddington, R.C, Salvesen, G.S.
Deposit date:2000-05-15
Release date:2000-09-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Crystal structure of the apoptotic suppressor CrmA in its cleaved form.
Structure Fold.Des., 8, 2000
8QDB
DownloadVisualize
BU of 8qdb by Molmil
Wdyg1p Ser256DHA (PSF)
Descriptor: 1,2-ETHANEDIOL, Yellowish-green 1-like protein
Authors:Schmalhofer, M, Vagstad, A.L, Zhou, Q, Bode, H.B, Groll, M.
Deposit date:2023-08-28
Release date:2024-03-13
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments.
Adv Sci, 11, 2024
8QD8
DownloadVisualize
BU of 8qd8 by Molmil
Wdyg1p in complex with 1,3-Dihydroxynaphthalene
Descriptor: 1,2-ETHANEDIOL, Yellowish-green 1-like protein, naphthalene-1,3-diol
Authors:Schmalhofer, M, Vagstad, A.L, Zhou, Q, Bode, H.B, Groll, M.
Deposit date:2023-08-28
Release date:2024-03-13
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments.
Adv Sci, 11, 2024
8QD2
DownloadVisualize
BU of 8qd2 by Molmil
Ayg1p in complex with 1,3-Dihydroxynaphthalene
Descriptor: Pigment biosynthesis protein yellowish-green 1, naphthalene-1,3-diol
Authors:Schmalhofer, M, Vagstad, A.L, Zhou, Q, Bode, H.B, Groll, M.
Deposit date:2023-08-28
Release date:2024-03-13
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments.
Adv Sci, 11, 2024
8QD6
DownloadVisualize
BU of 8qd6 by Molmil
AntI Ser245DHA (PMSF)
Descriptor: ACETATE ION, Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 15/17, SODIUM ION, ...
Authors:Schmalhofer, M, Vagstad, A.L, Zhou, Q, Bode, H.B, Groll, M.
Deposit date:2023-08-28
Release date:2024-03-13
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments.
Adv Sci, 11, 2024
8QD1
DownloadVisualize
BU of 8qd1 by Molmil
Ayg1p from A. fumigatus catalyzes polyketide shortening in the biosynthesis of DHN-melanin
Descriptor: Pigment biosynthesis protein yellowish-green 1
Authors:Schmalhofer, M, Vagstad, A.L, Zhou, Q, Bode, H.B, Groll, M.
Deposit date:2023-08-28
Release date:2024-03-13
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments.
Adv Sci, 11, 2024
8QD4
DownloadVisualize
BU of 8qd4 by Molmil
Ayg1p active site converted to tetrahedral sulfonate ester
Descriptor: Pigment biosynthesis protein yellowish-green 1, phenylmethanesulfonic acid
Authors:Schmalhofer, M, Vagstad, A.L, Zhou, Q, Bode, H.B, Groll, M.
Deposit date:2023-08-28
Release date:2024-03-13
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments.
Adv Sci, 11, 2024

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon