Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1XZN
DownloadVisualize
BU of 1xzn by Molmil
PYRR, THE REGULATOR OF THE PYRIMIDINE BIOSYNTHETIC OPERON IN BACILLUS CALDOLYTICUS, sulfate-bound form
Descriptor: MAGNESIUM ION, PyrR bifunctional protein, SULFATE ION
Authors:Chander, P, Halbig, K.M, Miller, J.K, Fields, C.J, Bonner, H.K, Grabner, G.K, Switzer, R.L, Smith, J.L.
Deposit date:2004-11-12
Release date:2005-03-01
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structure of the Nucleotide Complex of PyrR, the pyr Attenuation Protein from Bacillus caldolyticus, Suggests Dual Regulation by Pyrimidine and Purine Nucleotides.
J.Bacteriol., 187, 2005
4X7X
DownloadVisualize
BU of 4x7x by Molmil
MycF mycinamicin III 3'-O-methyltransferase (E35Q, E139A variant) in complex with Mg, SAH and macrocin
Descriptor: 2-[(4R,5S,6S,7R,9R,11E,13E,15R,16R)-6-[(2R,3R,4R,5S,6R)-4-(dimethylamino)-5-[(2S,4R,5S,6S)-4,6-dimethyl-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-methyl-3-oxidanyl-oxan-2-yl]oxy-16-ethyl-15-[[(2R,3R,4R,5S,6R)-3-methoxy-6-methyl-4,5-bis(oxidanyl)oxan-2-yl]oxymethyl]-5,9,13-trimethyl-4-oxidanyl-2,10-bis(oxidanylidene)-1-oxacyclohexadeca-11,13-dien-7-yl]ethanal, MAGNESIUM ION, Mycinamicin III 3''-O-methyltransferase, ...
Authors:Bernard, S.M, Smith, J.L.
Deposit date:2014-12-09
Release date:2015-03-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Basis of Substrate Specificity and Regiochemistry in the MycF/TylF Family of Sugar O-Methyltransferases.
Acs Chem.Biol., 10, 2015
4X7Y
DownloadVisualize
BU of 4x7y by Molmil
MycF mycinamicin III 3'-O-methyltransferase (E35Q, M56A, E139A variant) in complex with Mg and SAH
Descriptor: MAGNESIUM ION, Mycinamicin III 3''-O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Bernard, S.M, Smith, J.L.
Deposit date:2014-12-09
Release date:2015-03-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Basis of Substrate Specificity and Regiochemistry in the MycF/TylF Family of Sugar O-Methyltransferases.
Acs Chem.Biol., 10, 2015
4X7V
DownloadVisualize
BU of 4x7v by Molmil
MycF mycinamicin III 3'-O-methyltransferase (E35Q, E139A variant) in complex with Mg, SAH and mycinamicin IV (product)
Descriptor: MAGNESIUM ION, MYCINAMICIN IV, Mycinamicin III 3''-O-methyltransferase, ...
Authors:Bernard, S.M, Smith, J.L.
Deposit date:2014-12-09
Release date:2015-03-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural Basis of Substrate Specificity and Regiochemistry in the MycF/TylF Family of Sugar O-Methyltransferases.
Acs Chem.Biol., 10, 2015
4XVZ
DownloadVisualize
BU of 4xvz by Molmil
MycF mycinamicin III 3'-O-methyltransferase in complex with Mg
Descriptor: CHLORIDE ION, MAGNESIUM ION, Mycinamicin III 3''-O-methyltransferase
Authors:Akey, D.L, Smith, J.L.
Deposit date:2015-01-28
Release date:2015-03-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural Basis of Substrate Specificity and Regiochemistry in the MycF/TylF Family of Sugar O-Methyltransferases.
Acs Chem.Biol., 10, 2015
4XVY
DownloadVisualize
BU of 4xvy by Molmil
MycF mycinamicin III 3'-O-methyltransferase in complex with SAH
Descriptor: MAGNESIUM ION, Mycinamicin III 3''-O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Akey, D.L, Smith, J.L.
Deposit date:2015-01-28
Release date:2015-03-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Structural Basis of Substrate Specificity and Regiochemistry in the MycF/TylF Family of Sugar O-Methyltransferases.
Acs Chem.Biol., 10, 2015
6AL7
DownloadVisualize
BU of 6al7 by Molmil
Crystal structure HpiC1 F138S
Descriptor: 12-epi-hapalindole C/U synthase, CALCIUM ION
Authors:Newmister, S.A, Li, S, Garcia-Borras, M, Sanders, J.N, Yang, S, Lowell, A.N, Yu, F, Smith, J.L, Williams, R.M, Houk, K.N, Sherman, D.H.
Deposit date:2017-08-07
Release date:2018-03-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.687 Å)
Cite:Structural basis of the Cope rearrangement and cyclization in hapalindole biogenesis.
Nat. Chem. Biol., 14, 2018
6AL6
DownloadVisualize
BU of 6al6 by Molmil
Crystal structure HpiC1 in P42 space group
Descriptor: 12-epi-hapalindole C/U synthase, CALCIUM ION
Authors:Newmister, S.A, Li, S, Garcia-Borras, M, Sanders, J.N, Yang, S, Lowell, A.N, Yu, F, Smith, J.L, Williams, R.M, Houk, K.N, Sherman, D.H.
Deposit date:2017-08-07
Release date:2018-03-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.088 Å)
Cite:Structural basis of the Cope rearrangement and cyclization in hapalindole biogenesis.
Nat. Chem. Biol., 14, 2018
4X7Z
DownloadVisualize
BU of 4x7z by Molmil
MycF mycinamicin III 3'-O-methyltransferase (E35Q, M56A, E139A variant) in complex with Mg, SAH and mycinamicin III (substrate)
Descriptor: DIMETHYL SULFOXIDE, MAGNESIUM ION, MYCINAMICIN III, ...
Authors:Bernard, S.M, Smith, J.L.
Deposit date:2014-12-09
Release date:2015-03-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Structural Basis of Substrate Specificity and Regiochemistry in the MycF/TylF Family of Sugar O-Methyltransferases.
Acs Chem.Biol., 10, 2015
4X7W
DownloadVisualize
BU of 4x7w by Molmil
MycF mycinamicin III 3'-O-methyltransferase (E35Q, E139A variant) in complex with Mg, SAH and mycinamicin VI (MycE substrate)
Descriptor: MAGNESIUM ION, Mycinamicin III 3''-O-methyltransferase, Mycinamicin VI, ...
Authors:Bernard, S.M, Smith, J.L.
Deposit date:2014-12-09
Release date:2015-03-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Basis of Substrate Specificity and Regiochemistry in the MycF/TylF Family of Sugar O-Methyltransferases.
Acs Chem.Biol., 10, 2015
4X7U
DownloadVisualize
BU of 4x7u by Molmil
MycF mycinamicin III 3'-O-methyltransferase in complex with Mg, SAH and mycinamicin III (substrate)
Descriptor: MAGNESIUM ION, MYCINAMICIN III, Mycinamicin III 3''-O-methyltransferase, ...
Authors:Bernard, S.M, Smith, J.L.
Deposit date:2014-12-09
Release date:2015-03-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Basis of Substrate Specificity and Regiochemistry in the MycF/TylF Family of Sugar O-Methyltransferases.
Acs Chem.Biol., 10, 2015
4X81
DownloadVisualize
BU of 4x81 by Molmil
MycF mycinamicin III 3'-O-methyltransferase (E35Q, M56A, E139A variant) in complex with Mg, SAH and mycinamicin VI (MycE substrate)
Descriptor: DIMETHYL SULFOXIDE, MAGNESIUM ION, Mycinamicin III 3''-O-methyltransferase, ...
Authors:Bernard, S.M, Smith, J.L.
Deposit date:2014-12-09
Release date:2015-03-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structural Basis of Substrate Specificity and Regiochemistry in the MycF/TylF Family of Sugar O-Methyltransferases.
Acs Chem.Biol., 10, 2015
6BEV
DownloadVisualize
BU of 6bev by Molmil
Human Single Domain Sulfurtranferase TSTD1
Descriptor: Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1
Authors:Motl, N, Akey, D.L, Smith, J.L, Banerjee, R.
Deposit date:2017-10-25
Release date:2018-01-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.043 Å)
Cite:Thiosulfate sulfurtransferase-like domain-containing 1 protein interacts with thioredoxin.
J. Biol. Chem., 293, 2018
6B3A
DownloadVisualize
BU of 6b3a by Molmil
AprA Methyltransferase 1 - GNAT didomain in complex with Mn2+ and SAM
Descriptor: AprA Methyltransferase 1, GLYCEROL, MANGANESE (II) ION, ...
Authors:Skiba, M.A, Smith, J.L.
Deposit date:2017-09-21
Release date:2017-11-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.784 Å)
Cite:A Mononuclear Iron-Dependent Methyltransferase Catalyzes Initial Steps in Assembly of the Apratoxin A Polyketide Starter Unit.
ACS Chem. Biol., 12, 2017
6B3B
DownloadVisualize
BU of 6b3b by Molmil
AprA Methyltransferase 1 - GNAT in complex with Mn2+ , SAM, and Malonate
Descriptor: AprA Methyltransferase 1, GLYCEROL, MALONATE ION, ...
Authors:Skiba, M.A, Smith, J.L.
Deposit date:2017-09-21
Release date:2017-11-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A Mononuclear Iron-Dependent Methyltransferase Catalyzes Initial Steps in Assembly of the Apratoxin A Polyketide Starter Unit.
ACS Chem. Biol., 12, 2017
6B39
DownloadVisualize
BU of 6b39 by Molmil
AprA Methyltransferase 1 - GNAT in complex with SAH
Descriptor: AprA Methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION
Authors:Skiba, M.A, Smith, J.L.
Deposit date:2017-09-21
Release date:2017-11-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.392 Å)
Cite:A Mononuclear Iron-Dependent Methyltransferase Catalyzes Initial Steps in Assembly of the Apratoxin A Polyketide Starter Unit.
ACS Chem. Biol., 12, 2017
6AL8
DownloadVisualize
BU of 6al8 by Molmil
Crystal structure HpiC1 Y101F/F138S
Descriptor: 1,2-ETHANEDIOL, 12-epi-hapalindole C/U synthase, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Newmister, S.A, Li, S, Garcia-Borras, M, Sanders, J.N, Yang, S, Lowell, A.N, Yu, F, Smith, J.L, Williams, R.M, Houk, K.N, Sherman, D.H.
Deposit date:2017-08-07
Release date:2018-03-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.641 Å)
Cite:Structural basis of the Cope rearrangement and cyclization in hapalindole biogenesis.
Nat. Chem. Biol., 14, 2018
3V7I
DownloadVisualize
BU of 3v7i by Molmil
Germicidin synthase (Gcs) from Streptomyces coelicolor, a type III polyketide synthase
Descriptor: Putative polyketide synthase
Authors:Akey, D.L, Smith, J.L, Geders, T.W.
Deposit date:2011-12-21
Release date:2012-04-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Biochemical and Structural Characterization of Germicidin Synthase: Analysis of a Type III Polyketide Synthase That Employs Acyl-ACP as a Starter Unit Donor.
J.Am.Chem.Soc., 134, 2012
3SSO
DownloadVisualize
BU of 3sso by Molmil
MycE Methyltransferase from the Mycinamycin Biosynthetic Pathway in Complex with Mg and SAH, Crystal form 2
Descriptor: MAGNESIUM ION, Methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Akey, D.L, Smith, J.L.
Deposit date:2011-07-08
Release date:2011-08-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.895 Å)
Cite:A new structural form in the SAM/metal-dependent o‑methyltransferase family: MycE from the mycinamicin biosynthetic pathway.
J.Mol.Biol., 413, 2011
3SSN
DownloadVisualize
BU of 3ssn by Molmil
MycE Methyltransferase from the Mycinamycin Biosynthetic Pathway in Complex with Mg, SAH, and Mycinamycin VI
Descriptor: DIMETHYL SULFOXIDE, GLYCEROL, MAGNESIUM ION, ...
Authors:Akey, D.L, Smith, J.L.
Deposit date:2011-07-08
Release date:2011-08-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.392 Å)
Cite:A new structural form in the SAM/metal-dependent o‑methyltransferase family: MycE from the mycinamicin biosynthetic pathway.
J.Mol.Biol., 413, 2011
3SSM
DownloadVisualize
BU of 3ssm by Molmil
MycE Methyltransferase from the Mycinamycin Biosynthetic Pathway in Complex with Mg and SAH, Crystal form 1
Descriptor: MAGNESIUM ION, Methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Akey, D.L, Smith, J.L.
Deposit date:2011-07-08
Release date:2011-08-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.247 Å)
Cite:A new structural form in the SAM/metal-dependent o‑methyltransferase family: MycE from the mycinamicin biosynthetic pathway.
J.Mol.Biol., 413, 2011
3U1T
DownloadVisualize
BU of 3u1t by Molmil
Haloalkane Dehalogenase, DmmA, of marine microbial origin
Descriptor: CHLORIDE ION, DmmA Haloalkane Dehalogenase, MALONATE ION
Authors:Gehret, J.J, Smith, J.L.
Deposit date:2011-09-30
Release date:2011-12-28
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and activity of DmmA, a marine haloalkane dehalogenase.
Protein Sci., 21, 2012
6UEJ
DownloadVisualize
BU of 6uej by Molmil
Crystal structure of human zinc finger antiviral protein bound to RNA
Descriptor: RNA (5'-R(P*UP*CP*G)-3'), SPERMINE, ZINC ION, ...
Authors:Meagher, J.L, Smith, J.L.
Deposit date:2019-09-21
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure of the zinc-finger antiviral protein in complex with RNA reveals a mechanism for selective targeting of CG-rich viral sequences.
Proc.Natl.Acad.Sci.USA, 116, 2019
6UEI
DownloadVisualize
BU of 6uei by Molmil
Crystal structure of human zinc finger antiviral protein
Descriptor: ZINC ION, Zinc finger CCCH-type antiviral protein 1
Authors:Meagher, J.L, Smith, J.L.
Deposit date:2019-09-21
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structure of the zinc-finger antiviral protein in complex with RNA reveals a mechanism for selective targeting of CG-rich viral sequences.
Proc.Natl.Acad.Sci.USA, 116, 2019
4TPL
DownloadVisualize
BU of 4tpl by Molmil
West Nile Virus Non-structural protein 1 (NS1) Form 1 crystal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, OXTOXYNOL-10, ...
Authors:Akey, D.L, Smith, J.L.
Deposit date:2014-06-08
Release date:2014-10-15
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Use of massively multiple merged data for low-resolution S-SAD phasing and refinement of flavivirus NS1.
Acta Crystallogr.,Sect.D, 70, 2014

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon