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6NP6
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BU of 6np6 by Molmil
Crystal structure of the sensor domain of the transcriptional regulator HcpR from Porphyromonas Gingivalis
Descriptor: Crp/Fnr family transcriptional regulator, GLYCEROL
Authors:Musayev, F.N, Belvin, B.R, Escalante, C.R, Turner, J, Scarsdale, J.N, Lewis, J.P.
Deposit date:2019-01-17
Release date:2019-06-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Nitrosative Stress Sensing in Porphyromonas gingivalis: Structure and Mechanisms of the Heme Binding Transcriptional Regulator HcpR.
Acta Crystallogr D Struct Biol, 75, 2019
2QX1
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BU of 2qx1 by Molmil
Crystal structure of the complex between mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthase III (FABH) and decyl-COA disulfide
Descriptor: Beta-ketoacyl-ACP synthase III, COENZYME A, DECANE-1-THIOL
Authors:Sachdeva, S, Musayev, F, Alhamadsheh, M, Scarsdale, J.N, Wright, H.T, Reynolds, K.A.
Deposit date:2007-08-10
Release date:2008-03-18
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Probing reactivity and substrate specificity of both subunits of the dimeric Mycobacterium tuberculosis FabH using alkyl-CoA disulfide inhibitors and acyl-CoA substrates
Bioorg.Chem., 36, 2008
1KD3
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BU of 1kd3 by Molmil
The Crystal Structure of r(GGUCACAGCCC)2, Thallium form
Descriptor: 5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3', THALLIUM (I) ION
Authors:Kacer, V, Scaringe, S.A, Scarsdale, J.N, Rife, J.P.
Deposit date:2001-11-12
Release date:2003-03-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of r(GGUCACAGCCC)2.
Acta Crystallogr.,Sect.D, 59, 2003
1KD4
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BU of 1kd4 by Molmil
The Crystal Structure of r(GGUCACAGCCC)2, Barium form
Descriptor: 5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3', BARIUM ION
Authors:Kacer, V, Scaringe, S.A, Scarsdale, J.N, Rife, J.P.
Deposit date:2001-11-12
Release date:2003-03-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of r(GGUCACAGCCC)2.
Acta Crystallogr.,Sect.D, 59, 2003
1KD5
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BU of 1kd5 by Molmil
The Crystal Structure of r(GGUCACAGCCC)2 metal free form
Descriptor: 5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3'
Authors:Kacer, V, Scaringe, S.A, Scarsdale, J.N, Rife, J.P.
Deposit date:2001-11-12
Release date:2003-03-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structures of r(GGUCACAGCCC)2.
Acta Crystallogr.,Sect.D, 59, 2003
3PMA
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BU of 3pma by Molmil
2.2 Angstrom crystal structure of the complex between Bovine Thrombin and Sucrose Octasulfate
Descriptor: 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose, CITRIC ACID, SODIUM ION, ...
Authors:Wright, H.T, Scarsdale, J.N, Desai, B.J.
Deposit date:2010-11-16
Release date:2011-07-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Interaction of thrombin with sucrose octasulfate.
Biochemistry, 50, 2011
3PMB
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BU of 3pmb by Molmil
2.9 Angstrom crystal structure of bovine thrombin in tetragonal spacegroup
Descriptor: SODIUM ION, Thrombin heavy chain, Thrombin light chain
Authors:Wright, H.T, Scarsdale, J.N, Desai, B.J.
Deposit date:2010-11-16
Release date:2011-07-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Interaction of thrombin with sucrose octasulfate.
Biochemistry, 50, 2011
2MB7
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BU of 2mb7 by Molmil
Solution structure of MBD3 methylcytosine binding domain
Descriptor: Methyl-CpG-binding domain protein 3
Authors:Williams Jr, D.C, Scarsdale, J.N.
Deposit date:2013-07-26
Release date:2013-12-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Probing the Dynamic Distribution of Bound States for Methylcytosine-binding Domains on DNA.
J.Biol.Chem., 289, 2014
1QYR
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BU of 1qyr by Molmil
2.1 Angstrom Crystal structure of KsgA: A Universally Conserved Adenosine Dimethyltransferase
Descriptor: High level Kasugamycin resistance protein
Authors:O'Farrell, H.C, Scarsdale, J.N, Wright, H.T, Rife, J.P.
Deposit date:2003-09-11
Release date:2004-06-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of KsgA, a universally conserved rRNA adenine dimethyltransferase in Escherichia coli
J.Mol.Biol., 339, 2004
1LS3
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BU of 1ls3 by Molmil
Crystal Structure of the Complex between Rabbit Cytosolic Serine Hydroxymethyltransferase and TriGlu-5-formyl-tetrahydrofolate
Descriptor: 2-[4-(4-{4-[(2-AMINO-5-FORMYL-4-OXO-3,4,5,6,7,8-HEXAHYDRO-PTERIDIN-6-YLMETHYL)-AMINO]-BENZOYLAMINO}-4-CARBOXY-BUTYRYLAM INO)-4-CARBOXY-BUTYRYLAMINO]-PENTANEDIOIC ACID, GLYCEROL, GLYCINE, ...
Authors:Fu, T.F, Scarsdale, J.N, Kazanina, G, Schirch, V, Wright, H.T.
Deposit date:2002-05-16
Release date:2003-02-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Location of the Pteroylpolyglutamate Binding Site on Rabbit Cytosolic Serine Hydroxymethyltransferase
J.Biol.Chem., 278, 2003
2KY8
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BU of 2ky8 by Molmil
Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target methylated DNA sequence
Descriptor: DNA (5'-D(*GP*AP*GP*CP*(5CM)P*GP*AP*TP*(TED)P*CP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*TP*(5CM)P*GP*GP*CP*(TED)P*C)-3'), MANGANESE (II) ION, ...
Authors:Williams Jr, D.C, Scarsdale Jr, J.N.
Deposit date:2010-05-18
Release date:2011-05-18
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence.
Nucleic Acids Res., 39, 2011
1EQB
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BU of 1eqb by Molmil
X-RAY CRYSTAL STRUCTURE AT 2.7 ANGSTROMS RESOLUTION OF TERNARY COMPLEX BETWEEN THE Y65F MUTANT OF E-COLI SERINE HYDROXYMETHYLTRANSFERASE, GLYCINE AND 5-FORMYL TETRAHYDROFOLATE
Descriptor: GLYCINE, N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Contestabile, R, Angelaccio, S, Bossa, F, Wright, H.T, Scarsdale, N, Kazanina, G, Schirch, V.
Deposit date:2000-04-03
Release date:2000-04-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Role of tyrosine 65 in the mechanism of serine hydroxymethyltransferase.
Biochemistry, 39, 2000
2L2L
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BU of 2l2l by Molmil
Solution structure of the coiled-coil complex between MBD2 and p66alpha
Descriptor: Methyl-CpG-binding domain protein 2, Transcriptional repressor p66-alpha
Authors:Williams Jr, D.C, Scarsdale Jr, N.
Deposit date:2010-08-20
Release date:2011-05-04
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:p66Alpha-MBD2 coiled-coil interaction and recruitment of Mi-2 are critical for globin gene silencing by the MBD2-NuRD complex.
Proc.Natl.Acad.Sci.USA, 108, 2011
5V30
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BU of 5v30 by Molmil
Crystal structure of the sensor domain of the transcriptional regulator HcpR from Porphyromonas Gingivalis
Descriptor: GLYCEROL, SULFATE ION, Transcriptional regulator
Authors:Musayev, F.N, Belvin, B.R, Escalante, C.R, Turner, J, Lewis, J.P.
Deposit date:2017-03-06
Release date:2018-06-13
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Nitrosative stress sensing in Porphyromonas gingivalis: structure of and heme binding by the transcriptional regulator HcpR.
Acta Crystallogr D Struct Biol, 75, 2019
2MOE
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BU of 2moe by Molmil
Solution structure of MBD4 methyl-cytosine binding domain bound to methylated DNA
Descriptor: DNA (5'-D(*GP*AP*GP*CP*(5CM)P*GP*AP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*(5CM)P*GP*GP*CP*TP*C)-3'), Methyl-CpG-binding domain protein 4
Authors:Williams, D.C, Walavalkar, N.M.
Deposit date:2014-04-24
Release date:2014-09-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure and intramolecular exchange of methyl-cytosine binding domain protein 4 (MBD4) on DNA suggests a mechanism to scan for mCpG/TpG mismatches.
Nucleic Acids Res., 42, 2015
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