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6M7O
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BU of 6m7o by Molmil
Human DNA polymerase eta ternary complex with Mn2+ and dTMPNPP oppositing cdA
Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*AP*TP*(02I)P*CP*TP*CP*AP*CP*AP*CP*T)-3'), DNA (5'-D(P*AP*GP*TP*GP*TP*GP*AP*G*(1FZ))-3'), ...
Authors:Weng, P, Gao, Y, Yang, W.
Deposit date:2018-08-20
Release date:2018-09-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6M7T
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BU of 6m7t by Molmil
Human DNA polymerase eta in a non-productive ternary complex with Ca2+ and dTTP oppositing cdA
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DNA (5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3'), ...
Authors:Weng, P, Gao, Y, Yang, W.
Deposit date:2018-08-21
Release date:2018-09-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6M7U
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BU of 6m7u by Molmil
Human DNA polymerase eta in a non-productive ternary complex with Mg2+ and dTMPNPP oppositing cdA
Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, CHLORIDE ION, DNA (5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3'), ...
Authors:Weng, P, Gao, Y, Yang, W.
Deposit date:2018-08-21
Release date:2018-09-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6M7V
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BU of 6m7v by Molmil
Human DNA polymerase eta extension complex with cdA at the -1 position
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(P*(02I)P*CP*TP*CP*AP*CP*AP*CP*T)-3'), DNA (5'-D(P*GP*TP*GP*TP*GP*AP*GP*T)-3'), ...
Authors:Weng, P, Gao, Y, Yang, W.
Deposit date:2018-08-21
Release date:2018-09-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.062 Å)
Cite:Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8I8C
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BU of 8i8c by Molmil
Plug structure of the Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Descriptor: Occlusion-derived virus envelope/capsid protein, P40
Authors:Jia, X, Gao, Y, Zhang, Q.
Deposit date:2023-02-03
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (4.93 Å)
Cite:Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
8I8B
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BU of 8i8b by Molmil
Outer shell and inner layer structures of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Descriptor: 38K, AcOrf-109 peptide, Early 49 Daa protein, ...
Authors:Jia, X, Gao, Y, Zhang, Q.
Deposit date:2023-02-03
Release date:2023-12-13
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.31 Å)
Cite:Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
8K58
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BU of 8k58 by Molmil
The cryo-EM map of close TIEA-TEC complex
Descriptor: 15 kDa RNA polymerase-binding protein, DNA (29-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Zhang, K.N, Liu, Y, Chen, M, Wang, Y, Lin, W, Li, M, Zhang, X, Gao, Y, Gong, Q, Chen, H, Steve, M, Li, S, Zhang, K, Liu, B.
Deposit date:2023-07-21
Release date:2024-07-24
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:TIEA inhibits Sigma70-dependent transcriptions, accelerates elongation speed and elevates transcription error
To Be Published
8K5A
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BU of 8k5a by Molmil
The cryo-EM map of open TIEA-TEC complex
Descriptor: 15 kDa RNA polymerase-binding protein, DNA (29-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Zhang, K.N, Liu, Y, Chen, M, Wang, Y, Lin, W, Li, M, Zhang, X, Gao, Y, Gong, Q, Chen, H, Steve, M, Li, S, Zhang, K, Liu, B.
Deposit date:2023-07-21
Release date:2024-07-24
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:TIEA inhibits sigma70-dependent transcriptions, accelerates elongation speed and elevates transcription error
To Be Published
8GYE
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BU of 8gye by Molmil
Crystal Structure of the 4-1BB in complex with ZG033 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Tumor necrosis factor receptor superfamily member 9, ...
Authors:Zhu, M, Cheng, L.S, Gao, Y.
Deposit date:2022-09-22
Release date:2023-09-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the 4-1BB in complex with ZG033 Fab
To Be Published
7XDK
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BU of 7xdk by Molmil
Cryo-EM structure of SARS-CoV-2 Delta Spike protein in complex with BA7054 and BA7125 fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BA7054 fab, ...
Authors:Liu, Z, Lui, S, Gao, Y.
Deposit date:2022-03-27
Release date:2023-03-01
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Biparatopic antibody BA7208/7125 effectively neutralizes SARS-CoV-2 variants including Omicron BA.1-BA.5.
Cell Discov, 9, 2023
7Y3E
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BU of 7y3e by Molmil
Cryo-EM structure of Arabidopsis thaliana SOS1 in an occluded state
Descriptor: HEXADECANE, Sodium/hydrogen exchanger 7
Authors:Wang, Y, Zhao, Y, Gao, Y.
Deposit date:2022-06-10
Release date:2023-08-09
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Architecture and autoinhibitory mechanism of the plasma membrane Na + /H + antiporter SOS1 in Arabidopsis.
Nat Commun, 14, 2023
5YDP
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BU of 5ydp by Molmil
Crystal Structure of TetR Family Repressor AlkX from Dietzia sp. Strain DQ12-45-1b Implicated in Biodegradation of n-Alkanes
Descriptor: TetR transcriptional regulatory protein
Authors:Zheng, H, Gao, Y, Liang, J.L.
Deposit date:2017-09-14
Release date:2017-10-04
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.091 Å)
Cite:Crystal Structure of TetR Family Repressor AlkX from Dietzia sp. Strain DQ12-45-1b Implicated in Biodegradation ofn-Alkanes.
Appl. Environ. Microbiol., 83, 2017
7X2U
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BU of 7x2u by Molmil
Structure of a human NHE3-CHP1 complex in the autoinhibited state
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, Calcineurin B homologous protein 1, Sodium/hydrogen exchanger 3, ...
Authors:Dong, Y, Li, H, Gao, Y, Zhang, X.C, Zhao, Y.
Deposit date:2022-02-26
Release date:2022-04-20
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of a human NHE3-CHP1 complex in the autoinhibited state
Sci Adv, 2022
8VNU
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BU of 8vnu by Molmil
Homing endonuclease H98A I-PpoI-DNA complex at pH6.0 (K+ MES) with 70 mM Tl+ for 1800s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8VMS
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BU of 8vms by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 80s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8VN3
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BU of 8vn3 by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 600s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8VND
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BU of 8vnd by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 600s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8VNM
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BU of 8vnm by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 320s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8VMU
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BU of 8vmu by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 320s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8VN5
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BU of 8vn5 by Molmil
Homing endonuclease I-PpoI-DNA complex:ground state at pH8.0 (Tris) with Na+
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8VMP
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BU of 8vmp by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 10s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8VMZ
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BU of 8vmz by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 40s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8VNA
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BU of 8vna by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 160s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8VNC
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BU of 8vnc by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 320s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8VNP
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BU of 8vnp by Molmil
Homing endonuclease I-PpoI-DNA complex at pH6.0 (K+ MES) with 0.2 M sodium malonate
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published

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PDB entries from 2024-11-13

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