Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5Q0E
DownloadVisualize
BU of 5q0e by Molmil
FACTOR XIA IN COMPLEX WITH THE INHIBITOR methyl [(4S,8S)-8-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enoyl}amino)-4-methyl-2-oxo-1,3,4,5,6,7,8,10-octahydro-2H-12,9-(azeno)-1,10-benzodiazacyclotetradecin-15-yl]carbamate
Descriptor: 1,2-ETHANEDIOL, Coagulation factor XI, SULFATE ION, ...
Authors:Sheriff, S.
Deposit date:2017-05-01
Release date:2017-07-12
Last modified:2018-02-21
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Macrocyclic inhibitors of Factor XIa: Discovery of alkyl-substituted macrocyclic amide linkers with improved potency.
Bioorg. Med. Chem. Lett., 27, 2017
4XML
DownloadVisualize
BU of 4xml by Molmil
Crystal structure of Fab of HIV-1 gp120 V3-specific human monoclonal antibody 2424
Descriptor: Heavy chain of HIV-1 gp120 V3-specific human monoclonal antibody 2424, Light chain of HIV-1 gp120 V3-specific human monoclonal antibody 2424
Authors:Pan, R, Kong, X.-P.
Deposit date:2015-01-14
Release date:2015-07-08
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Functional and Structural Characterization of Human V3-Specific Monoclonal Antibody 2424 with Neutralizing Activity against HIV-1 JRFL.
J.Virol., 89, 2015
4XAO
DownloadVisualize
BU of 4xao by Molmil
Crystal structure of the hPXR-LBD obtained in presence of the pesticide trans-nonachlor
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ISOPROPYL ALCOHOL, Nuclear receptor subfamily 1 group I member 2
Authors:Delfosse, V, Huet, T, Bourguet, W.
Deposit date:2014-12-15
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Synergistic activation of human pregnane X receptor by binary cocktails of pharmaceutical and environmental compounds.
Nat Commun, 6, 2015
2F98
DownloadVisualize
BU of 2f98 by Molmil
Crystal structure of the polyketide cyclase AknH with bound substrate and product analogue: implications for catalytic mechanism and product stereoselectivity.
Descriptor: Aklanonic Acid methyl Ester Cyclase, AknH, METHYL 5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE, ...
Authors:Kallio, P, Sultana, A, Neimi, J, Mantsala, P, Schneider, G.
Deposit date:2005-12-05
Release date:2006-02-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the polyketide cyclase AknH with bound substrate and product analogue: implications for catalytic mechanism and product stereoselectivity.
J.Mol.Biol., 357, 2006
4YG1
DownloadVisualize
BU of 4yg1 by Molmil
HipB-O1-O2 complex/P21212 crystal form
Descriptor: Antitoxin HipB, DNA (48-MER)
Authors:Schumacher, M.A.
Deposit date:2015-02-25
Release date:2015-07-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:HipBA-promoter structures reveal the basis of heritable multidrug tolerance.
Nature, 524, 2015
5Q0G
DownloadVisualize
BU of 5q0g by Molmil
FACTOR XIA IN COMPLEX WITH THE INHIBITOR methyl [(3R,7S)-7-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enoyl}amino)-3-ethyl-2-oxo-1,2,3,4,5,6,7,9-octahydro-11,8-(azeno)-1,9-benzodiazacyclotridecin-14-yl]carbamate
Descriptor: 1,2-ETHANEDIOL, Coagulation factor XI, SULFATE ION, ...
Authors:Sheriff, S.
Deposit date:2017-05-01
Release date:2017-07-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Macrocyclic inhibitors of Factor XIa: Discovery of alkyl-substituted macrocyclic amide linkers with improved potency.
Bioorg. Med. Chem. Lett., 27, 2017
5Q0H
DownloadVisualize
BU of 5q0h by Molmil
FACTOR XIA IN COMPLEX WITH THE INHIBITOR methyl [(4R,5E,8S)-11-chloro-8-[(2,6-difluoro-4-methylbenzene-1-carbonyl)amino]-4-methyl-2-oxo-1,3,4,7,8,10-hexahydro-2H-12,9-(azeno)-1,10-benzodiazacyclotetradecin-15-yl]carbamate
Descriptor: 1,2-ETHANEDIOL, Coagulation factor XI, SULFATE ION, ...
Authors:Sheriff, S.
Deposit date:2017-05-01
Release date:2017-07-12
Last modified:2018-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Macrocyclic inhibitors of Factor XIa: Discovery of alkyl-substituted macrocyclic amide linkers with improved potency.
Bioorg. Med. Chem. Lett., 27, 2017
2F99
DownloadVisualize
BU of 2f99 by Molmil
Crystal structure of the polyketide cyclase AknH with bound substrate and product analogue: implications for catalytic mechanism and product stereoselectivity.
Descriptor: Aklanonic Acid methyl Ester Cyclase, AknH, SULFATE ION, ...
Authors:Kallio, P, Sultana, A, Neimi, J, Mantsala, P, Schneider, G.
Deposit date:2005-12-05
Release date:2006-02-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the polyketide cyclase AknH with bound substrate and product analogue: implications for catalytic mechanism and product stereoselectivity.
J.Mol.Biol., 357, 2006
5Q0D
DownloadVisualize
BU of 5q0d by Molmil
FACTOR XIA IN COMPLEX WITH THE INHIBITOR methyl [(7S)-7-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enoyl}amino)-2-oxo-1,2,3,4,5,6,7,9-octahydro-11,8-(azeno)-1,9-benzodiazacyclotridecin-14-yl]carbamate
Descriptor: 1,2-ETHANEDIOL, Coagulation factor XI, SULFATE ION, ...
Authors:Sheriff, S.
Deposit date:2017-05-01
Release date:2017-07-12
Last modified:2018-02-21
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Macrocyclic inhibitors of Factor XIa: Discovery of alkyl-substituted macrocyclic amide linkers with improved potency.
Bioorg. Med. Chem. Lett., 27, 2017
5Q0F
DownloadVisualize
BU of 5q0f by Molmil
FACTOR XIA IN COMPLEX WITH THE INHIBITOR methyl [(4R,5E,8S)-8-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enoyl}amino)-4-methyl-2-oxo-1,3,4,7,8,10-hexahydro-2H-12,9-(azeno)-1,10-benzodiazacyclotetradecin-15-yl]carbamate
Descriptor: 1,2-ETHANEDIOL, Coagulation factor XI, MET-ASP-ASP-ASP-ASP-LYS-MET-ASP-ASN-GLU-CYS-THR-THR-LYS-ILE-LYS-PRO-ARG, ...
Authors:Sheriff, S.
Deposit date:2017-05-01
Release date:2017-07-12
Last modified:2018-02-21
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Macrocyclic inhibitors of Factor XIa: Discovery of alkyl-substituted macrocyclic amide linkers with improved potency.
Bioorg. Med. Chem. Lett., 27, 2017
2K72
DownloadVisualize
BU of 2k72 by Molmil
Solution NMR structure of toxin-like potassium channel blocking domain in MMP23
Descriptor: Matrix metalloproteinase-23
Authors:Khoo, K.K, Feng, Z, Norton, R.S.
Deposit date:2008-07-31
Release date:2010-01-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Potassium channel modulation by a toxin domain in matrix metalloprotease 23.
J.Biol.Chem., 285, 2010
4NQI
DownloadVisualize
BU of 4nqi by Molmil
Structure of the N-terminal I-BAR domain (1-259) of D.Discoideum IBARa
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, SH3 domain-containing protein
Authors:Witte, G, Faix, J, Runge-Wollmann, P.
Deposit date:2013-11-25
Release date:2014-02-05
Last modified:2014-04-02
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The inverse BAR domain protein IBARa drives membrane remodeling to control osmoregulation, phagocytosis and cytokinesis.
J.Cell.Sci., 127, 2014
6CDL
DownloadVisualize
BU of 6cdl by Molmil
HIV-1 wild type protease with GRL-03214A, 6-5-5-ring fused umbrella-like tetrahydropyranofuran as the P2-ligand, a cyclopropylaminobenzothiazole as the P2'-ligand and 3,5-difluorophenylmethyl as the P1-ligand
Descriptor: (2aR,4S,4aR,7aR,7bR)-octahydro-2H-1,7-dioxacyclopenta[cd]inden-4-yl [(2S,3R)-4-[{[2-(cyclopropylamino)-1,3-benzothiazol-6-yl]sulfonyl}(2-methylpropyl)amino]-1-(3,5-difluorophenyl)-3-hydroxybutan-2-yl]carbamate, ACETATE ION, CHLORIDE ION, ...
Authors:Wang, Y.-F, Agniswamy, J, Weber, I.T.
Deposit date:2018-02-08
Release date:2018-05-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Design and Synthesis of Highly Potent HIV-1 Protease Inhibitors Containing Tricyclic Fused Ring Systems as Novel P2 Ligands: Structure-Activity Studies, Biological and X-ray Structural Analysis.
J. Med. Chem., 61, 2018
2LOC
DownloadVisualize
BU of 2loc by Molmil
Conotoxin analogue [D-Ala2]BuIIIB
Descriptor: Mu-conotoxin BuIIIB
Authors:Kuang, Z.
Deposit date:2012-01-21
Release date:2013-01-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Mammalian neuronal sodium channel blocker mu-conotoxin BuIIIB has a structured N-terminus that influences potency.
Acs Chem.Biol., 8, 2013
2LO9
DownloadVisualize
BU of 2lo9 by Molmil
NMR solution structure of Mu-contoxin BuIIIB
Descriptor: Mu-conotoxin BuIIIB
Authors:Kuang, Z.
Deposit date:2012-01-20
Release date:2013-01-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Mammalian neuronal sodium channel blocker mu-conotoxin BuIIIB has a structured N-terminus that influences potency.
Acs Chem.Biol., 8, 2013
2M6F
DownloadVisualize
BU of 2m6f by Molmil
NMR solution structure of trans (major) form of In936 in Methanol
Descriptor: Contryphan-In
Authors:Sonti, R.
Deposit date:2013-03-29
Release date:2013-10-30
Last modified:2022-08-24
Method:SOLUTION NMR
Cite:Conformational diversity in contryphans from Conus venom: cis-trans isomerisation and aromatic/proline interactions in the 23-membered ring of a 7-residue peptide disulfide loop.
Chemistry, 19, 2013
2XFV
DownloadVisualize
BU of 2xfv by Molmil
Structure of the amino-terminal domain from the cell-cycle regulator Swi6
Descriptor: ACETATE ION, CACODYLATE ION, CALCIUM ION, ...
Authors:Smerdon, S.J, Goldstone, D.C, Taylor, I.A.
Deposit date:2010-05-27
Release date:2010-06-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the Amino-Terminal Domain from the Cell-Cycle Regulator Swi6S
Proteins, 78, 2010
5LVK
DownloadVisualize
BU of 5lvk by Molmil
Human Lysozyme co-crystallized with [H2Ind][trans-RuCl4(DMSO)(HInd)]
Descriptor: CHLORIDE ION, Lysozyme C, NITRATE ION, ...
Authors:Kurpiewska, K, Szura, A, Lewinski, K.
Deposit date:2016-09-14
Release date:2016-09-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.491 Å)
Cite:Ligand-dependent interaction of anticancer ruthenium complexes with hen egg white lysozyme and human lysozyme
To Be Published
2M6H
DownloadVisualize
BU of 2m6h by Molmil
Solution structure of trans(C2-P3) trans (D5-P6) of LO959 in methanol
Descriptor: Contryphan-Lo
Authors:Sonti, R.
Deposit date:2013-03-29
Release date:2013-10-30
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Conformational diversity in contryphans from Conus venom: cis-trans isomerisation and aromatic/proline interactions in the 23-membered ring of a 7-residue peptide disulfide loop.
Chemistry, 19, 2013
2M6G
DownloadVisualize
BU of 2m6g by Molmil
Solution structure of cis(C2-P3) trans (D5-P6) form of lO959 in water
Descriptor: Contryphan-Lo
Authors:Sonti, R.
Deposit date:2013-03-29
Release date:2013-10-30
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Conformational diversity in contryphans from Conus venom: cis-trans isomerisation and aromatic/proline interactions in the 23-membered ring of a 7-residue peptide disulfide loop.
Chemistry, 19, 2013
2M62
DownloadVisualize
BU of 2m62 by Molmil
Solution Structure of a Chi/Lambda Conotoxin fron Conus araneosus
Descriptor: Chi-conotoxin-like Ar1248
Authors:Sarma, S.P, Ganesan, S, Gowd K, H, Padmanabhan, B.
Deposit date:2013-03-19
Release date:2014-04-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution Structure of Ar1248, a Chi/Lambda conotoxin from Conus araneosus
To Be Published
2LXG
DownloadVisualize
BU of 2lxg by Molmil
NMR solution structure of Mu-conotoxin KIIIA
Descriptor: Mu-conotoxin KIIIA
Authors:Khoo, K.K, Norton, R.S.
Deposit date:2012-08-21
Release date:2013-02-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Distinct disulfide isomers of mu-conotoxins KIIIA and KIIIB block voltage-gated sodium channels.
Biochemistry, 51, 2012
6C3G
DownloadVisualize
BU of 6c3g by Molmil
AMYLOID FORMING PEPTIDE KALGIS FROM TRANSTHYRETIN
Descriptor: GLYCEROL, LYS-ALA-LEU-GLY-ILE-SER, SULFATE ION
Authors:Saelices, L, Sawaya, M.R, Eisenberg, D.S.
Deposit date:2018-01-09
Release date:2018-04-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Crystal structures of amyloidogenic segments of human transthyretin.
Protein Sci., 27, 2018
7L6W
DownloadVisualize
BU of 7l6w by Molmil
SFX structure of the MyD88 TIR domain higher-order assembly
Descriptor: Myeloid differentiation primary response protein MyD88
Authors:Clabbers, M.T.B, Holmes, S, Muusse, T.W, Vajjhala, P, Thygesen, S.J, Malde, A.K, Hunter, D.J.B, Croll, T.I, Flueckiger, L, Nanson, J.D, Rahaman, M.H, Aquila, A, Hunter, M.S, Liang, M, Yoon, C.H, Zhao, J, Zatsepin, N.A, Abbey, B, Sierecki, E, Gambin, Y, Stacey, K.J, Darmanin, C, Kobe, B, Xu, H, Ve, T.
Deposit date:2020-12-24
Release date:2021-03-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:MyD88 TIR domain higher-order assembly interactions revealed by microcrystal electron diffraction and serial femtosecond crystallography.
Nat Commun, 12, 2021
6C3F
DownloadVisualize
BU of 6c3f by Molmil
AMYLOID FORMING PEPTIDE IYKVEI FROM TRANSTHYRETIN
Descriptor: ILE-TYR-LYS-VAL-GLU-ILE, trifluoroacetic acid
Authors:Saelices, L, Sawaya, M.R, Eisenberg, D.S.
Deposit date:2018-01-09
Release date:2018-04-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.499 Å)
Cite:Crystal structures of amyloidogenic segments of human transthyretin.
Protein Sci., 27, 2018

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon