X-ray structure of neuropilin-1 b1 domain complexed with Arg-5 ligand.

Summary for 5J1X

Related5IJR 1KEX 3i97 5IYY
DescriptorNeuropilin-1, N~2~-(tert-butoxycarbonyl)-L-arginine, DIMETHYL SULFOXIDE, ... (4 entities in total)
Functional Keywordssignaling protein, neuropilin-1, angiogenesis
Biological sourceHomo sapiens (Human)
Total number of polymer chains4
Total molecular weight72844.57
Fotinou, C.,Rana, R.,Djordjevic, S.,Yelland, T. (deposition date: 2016-03-29, release date: 2017-04-05, Last modification date: 2018-07-11)
Primary citation
Mota, F.,Fotinou, C.,Rana, R.R.,Chan, A.W.E.,Yelland, T.,Arooz, M.T.,O'Leary, A.P.,Hutton, J.,Frankel, P.,Zachary, I.,Selwood, D.,Djordjevic, S.
Architecture and hydration of the arginine-binding site of neuropilin-1.
FEBS J., 285:1290-1304, 2018
PubMed: 29430837 (PDB entries with the same primary citation)
DOI: 10.1111/febs.14405
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.22910 0.6% 0.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-10-21