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5J1X

X-ray structure of neuropilin-1 b1 domain complexed with Arg-5 ligand.

Functional Information from PDB Data
site_idAC1
Number of Residues12
Detailsbinding site for residue AR5 A 501
ChainResidue
ATYR297
AHOH602
AHOH624
DMET276
ATRP301
ATHR316
AASP320
ASER346
ATHR349
ATYR353
AGLY414
AILE415

site_idAC2
Number of Residues12
Detailsbinding site for residue AR5 B 501
ChainResidue
BTYR297
BTRP301
BTHR316
BASP320
BSER346
BTHR349
BTYR353
BGLY414
BILE415
BHOH603
BHOH641
CMET276

site_idAC3
Number of Residues9
Detailsbinding site for residue AR5 C 501
ChainResidue
CTHR316
CASP320
CSER346
CTHR349
CLYS351
CTYR353
CGLY414
CILE415
CHOH638

site_idAC4
Number of Residues11
Detailsbinding site for residue AR5 D 501
ChainResidue
DTRP301
DTHR316
DASP320
DSER346
DTHR349
DTYR353
DGLY414
DILE415
DHOH601
DHOH643
DHOH649

site_idAC5
Number of Residues3
Detailsbinding site for residue DMS D 502
ChainResidue
DTYR322
DTHR410
DTRP411

Functional Information from PROSITE/UniProt
site_idPS01285
Number of Residues30
DetailsFA58C_1 Coagulation factors 5/8 type C domain (FA58C) signature 1. GWtpgedsyre......WIqVDlgllrfVtaVgTQG
ChainResidueDetails
AGLY314-GLY343

site_idPS01286
Number of Residues17
DetailsFA58C_2 Coagulation factors 5/8 type C domain (FA58C) signature 2. Patwetgis..MRfEVyGC
ChainResidueDetails
APRO408-CYS424

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues596
DetailsDomain: {"description":"F5/8 type C 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00081","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

247947

PDB entries from 2026-01-21

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