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5J1X

X-ray structure of neuropilin-1 b1 domain complexed with Arg-5 ligand.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2015-05-18
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.979
Spacegroup nameP 1 21 1
Unit cell lengths41.590, 90.480, 81.890
Unit cell angles90.00, 99.64, 90.00
Refinement procedure
Resolution80.730 - 2.100
R-factor0.18369
Rwork0.182
R-free0.22320
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1kex
RMSD bond length0.013
RMSD bond angle1.517
Data reduction softwarexia2
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]41.0001.950
High resolution limit [Å]1.9001.900
Rmerge0.1211.086
Number of reflections47057
<I/σ(I)>7.71.1
Completeness [%]99.999.9
Redundancy3.73.7
CC(1/2)0.995
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.928918% w/v PEG3350, 0.2M NH4Cl

217705

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