Crystal structure of the human BRPF1 bromodomain in complex with SEED6

Summary for 5DYC

Related5C7N 5C85 5C87 5C89 5D7X 5DY7 5DYA
DescriptorPeregrin, NITRATE ION, 7-bromo-3,4-dihydroquinoxalin-2(1H)-one, ... (4 entities in total)
Functional Keywordsdna binding protein, bromodomain and phd finger-containing protein 1(brpf1), monocytic leukemia zinc-finger (moz), inhibitor, transcription
Biological sourceHomo sapiens (Human)
Cellular locationNucleus  P55201
Total number of polymer chains1
Total molecular weight13992.76
Zhu, J.,Caflisch, A. (deposition date: 2015-09-24, release date: 2016-05-25, Last modification date: 2016-06-22)
Primary citation
Zhu, J.,Caflisch, A.
Twenty Crystal Structures of Bromodomain and PHD Finger Containing Protein 1 (BRPF1)/Ligand Complexes Reveal Conserved Binding Motifs and Rare Interactions.
J.Med.Chem., 59:5555-5561, 2016
PubMed: 27167503 (PDB entries with the same primary citation)
DOI: 10.1021/acs.jmedchem.6b00215
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.23530 1.0% 2.7%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-10-21