3WPC
Crystal structure of horse TLR9 in complex with agonistic DNA1668_12mer
Summary for 3WPC
Entry DOI | 10.2210/pdb3wpc/pdb |
Related | 3WPB 3WPD 3WPE 3WPF 3WPG 3WPH 3WPI |
Descriptor | Toll-like receptor 9, DNA (5'-D(*CP*AP*TP*GP*AP*CP*GP*TP*TP*CP*CP*T)-3'), 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... (8 entities in total) |
Functional Keywords | leucine rich repeat, receptor, innate immunity, dna binding, glycosylation, dna binding protein-dna complex, dna binding protein/dna |
Biological source | Equus caballus (domestic horse, equine) More |
Total number of polymer chains | 4 |
Total formula weight | 190113.57 |
Authors | Ohto, U.,Tanji, H.,Shimizu, T. (deposition date: 2014-01-11, release date: 2015-02-11, Last modification date: 2024-10-30) |
Primary citation | Ohto, U.,Shibata, T.,Tanji, H.,Ishida, H.,Krayukhina, E.,Uchiyama, S.,Miyake, K.,Shimizu, T. Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9 Nature, 520:702-705, 2015 Cited by PubMed Abstract: Innate immunity serves as the first line of defence against invading pathogens such as bacteria and viruses. Toll-like receptors (TLRs) are examples of innate immune receptors, which sense specific molecular patterns from pathogens and activate immune responses. TLR9 recognizes bacterial and viral DNA containing the cytosine-phosphate-guanine (CpG) dideoxynucleotide motif. The molecular basis by which CpG-containing DNA (CpG-DNA) elicits immunostimulatory activity via TLR9 remains to be elucidated. Here we show the crystal structures of three forms of TLR9: unliganded, bound to agonistic CpG-DNA, and bound to inhibitory DNA (iDNA). Agonistic-CpG-DNA-bound TLR9 formed a symmetric TLR9-CpG-DNA complex with 2:2 stoichiometry, whereas iDNA-bound TLR9 was a monomer. CpG-DNA was recognized by both protomers in the dimer, in particular by the amino-terminal fragment (LRRNT-LRR10) from one protomer and the carboxy-terminal fragment (LRR20-LRR22) from the other. The iDNA, which formed a stem-loop structure suitable for binding by intramolecular base pairing, bound to the concave surface from LRR2-LRR10. This structure serves as an important basis for improving our understanding of the functional mechanisms of TLR9. PubMed: 25686612DOI: 10.1038/nature14138 PDB entries with the same primary citation |
Experimental method | X-RAY DIFFRACTION (1.6 Å) |
Structure validation
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