2YDQ

CpOGA D298N in complex with hOGA-derived O-GlcNAc peptide

Summary for 2YDQ

Related2CBI 2VUR 2X0Y 2XPK 2J62 2JH2 2WB5 2V5C 2CBJ 2V5D 2YDS 2YDR
DescriptorO-GLCNACASE NAGJ, BIFUNCTIONAL PROTEIN NCOAT, CADMIUM ION, ... (5 entities in total)
Functional Keywordshydrolase-peptide complex, hydrolase/peptide
Biological sourceCLOSTRIDIUM PERFRINGENS
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Cellular locationIsoform 3: Nucleus. Isoform 1: Cytoplasm O60502
Total number of polymer chains2
Total molecular weight69157.78
Authors
Schimpl, M.,Borodkin, V.S.,Gray, L.J.,van Aalten, D.M.F. (deposition date: 2011-03-24, release date: 2012-03-14, Last modification date: 2020-07-29)
Primary citation
Schimpl, M.,Borodkin, V.S.,Gray, L.J.,Van Aalten, D.M.F.
Synergy of Peptide and Sugar in O-Glcnacase Substrate Recognition.
Chem.Biol., 19:173-, 2012
PubMed: 22365600 (PDB entries with the same primary citation)
DOI: 10.1016/J.CHEMBIOL.2012.01.011
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.6 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2263 0.3% 1.8% 1.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
170172
PDB entries from 2020-10-21