7MYZ
Structure of the full length 5-TM receptor CD47 bound to Fab B6H12
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B (C, D) | Fusion protein of Leukocyte surface antigen CD47 an Soluble cytochrome b562 | polymer | 421 | 46644.9 | 2 | UniProt (Q08722) UniProt (P0ABE7) Pfam (PF08204) Pfam (PF04549) Pfam (PF07361) | Homo sapiens (Human) | Antigenic surface determinant protein OA3,Integrin-associated protein,IAP,Protein MER6,Cytochrome b-562,Antigenic surface determinant protein OA3,Integrin-associated protein,IAP,Protein MER6 |
2 | C, D (H, I) | B6H12 Fab heavy chain | polymer | 220 | 23264.1 | 2 | Homo sapiens (Human) | ||
3 | E, F (L, M) | B6H12 Fab light chain | polymer | 213 | 23270.8 | 2 | Homo sapiens (Human) | ||
4 | G, H, I, J, K... (C, D) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 7 | Chemie (NAG) | |||
5 | N (L) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
6 | O, P (I, L) | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
C, D: 1 - 147 (UniProt: Q08722)
C, D: 147 - 151 (UniProt: P0ABE7)
C, D: 151 - 305 (UniProt: Q08722)
C, D: 147 - 151 (UniProt: P0ABE7)
PDB | External Database | Details |
---|---|---|
Trp 147 | Met 29 | conflict |
Ile 151 | His 124 | conflict |
Leu 151 | - | linker |
PDB | External Database | Details |
---|---|---|
His 306 | - | expression tag |
His 307 | - | expression tag |
His 308 | - | expression tag |
His 309 | - | expression tag |
His 310 | - | expression tag |
His 311 | - | expression tag |
His 312 | - | expression tag |
His 313 | - | expression tag |
His 314 | - | expression tag |
His 315 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 186359.5 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 1640.5 | |
All* | Total formula weight | 188000.1 |