7KMT
Structure of the yeast TRAPPIII-Ypt1(Rab1) complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (H) | Trafficking protein particle complex subunit 23 | polymer | 219 | 24889.3 | 1 | UniProt (Q03784) Pfam (PF04099) | Saccharomyces cerevisiae (Baker's yeast) | TRAPP subunit 23,Transport protein particle 23 kDa subunit |
| 2 | B (J) | Trafficking protein particle complex subunit 31 | polymer | 283 | 31755.7 | 1 | UniProt (Q03337) Pfam (PF04051) | Saccharomyces cerevisiae (Baker's yeast) | TRAPP subunit 31,Transport protein particle 31 kDa subunit |
| 3 | C (G) | Trafficking protein particle complex subunit BET5 | polymer | 159 | 18453.9 | 1 | UniProt (Q03630) Pfam (PF04099) | Saccharomyces cerevisiae (Baker's yeast) | TRAPP subunit BET5,Transport protein particle 18 kDa subunit |
| 4 | D, E (I, F) | Trafficking protein particle complex subunit BET3 | polymer | 193 | 22152.4 | 2 | UniProt (P36149) Pfam (PF04051) | Saccharomyces cerevisiae (Baker's yeast) | TRAPP subunit BET3,Transport protein particle 22 kDa subunit |
| 5 | F (E) | Trafficking protein particle complex subunit 33 | polymer | 268 | 30786.2 | 1 | UniProt (Q99394) Pfam (PF04051) | Saccharomyces cerevisiae (Baker's yeast) | TRAPP subunit 33,Transport protein particle 33 kDa subunit |
| 6 | G (K) | Trafficking protein particle complex subunit 20 | polymer | 175 | 19721.2 | 1 | UniProt (P38334) Pfam (PF04628) | Saccharomyces cerevisiae (Baker's yeast) | TRAPP subunit 20,Transport protein particle 20 kDa subunit |
| 7 | H (A) | GTP-binding protein YPT1 | polymer | 206 | 23240.2 | 1 | UniProt (P01123) Pfam (PF00071) | Saccharomyces cerevisiae (Baker's yeast) | Protein YP2,Rab GTPase YPT1,Transport GTPase YPT1 |
| 8 | I (B) | Trafficking protein particle complex III-specific subunit 85 | polymer | 717 | 82850.1 | 1 | UniProt (P46944) Pfam (PF12739) | Saccharomyces cerevisiae (Baker's yeast) | TRAPP III-specific subunit 85,Muddled meiosis protein 1,Sporulation protein GSG1,Transport protein particle 85 kDa subunit |
| 9 | J, K (I, F) | PALMITIC ACID | non-polymer | 256.4 | 2 | Chemie (PLM) |
Sequence modifications
B: 1 - 698 (UniProt: P46944)
| PDB | External Database | Details |
|---|---|---|
| Met -18 | - | initiating methionine |
| Gly -17 | - | expression tag |
| Ser -16 | - | expression tag |
| Ser -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Gln -7 | - | expression tag |
| Glu -6 | - | expression tag |
| Asn -5 | - | expression tag |
| Leu -4 | - | expression tag |
| Tyr -3 | - | expression tag |
| Phe -2 | - | expression tag |
| Gln -1 | - | expression tag |
| Gly 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 276001.4 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 512.8 | |
| All* | Total formula weight | 276514.2 |
