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7KMT

Structure of the yeast TRAPPIII-Ypt1(Rab1) complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000045biological_processautophagosome assembly
A0000139cellular_componentGolgi membrane
A0000149molecular_functionSNARE binding
A0000166molecular_functionnucleotide binding
A0000407cellular_componentphagophore assembly site
A0003924molecular_functionGTPase activity
A0005515molecular_functionprotein binding
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0005789cellular_componentendoplasmic reticulum membrane
A0005795cellular_componentGolgi stack
A0005801cellular_componentcis-Golgi network
A0005829cellular_componentcytosol
A0006886biological_processintracellular protein transport
A0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
A0006890biological_processretrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
A0006914biological_processautophagy
A0012505cellular_componentendomembrane system
A0015031biological_processprotein transport
A0016192biological_processvesicle-mediated transport
A0016236biological_processmacroautophagy
A0031410cellular_componentcytoplasmic vesicle
A0032258biological_processcytoplasm to vacuole targeting by the Cvt pathway
A0032456biological_processendocytic recycling
A0034045cellular_componentphagophore assembly site membrane
A0034497biological_processprotein localization to phagophore assembly site
A0034498biological_processearly endosome to Golgi transport
A0035493biological_processSNARE complex assembly
A0035494biological_processSNARE complex disassembly
A0048194biological_processGolgi vesicle budding
A0048211biological_processGolgi vesicle docking
A0061709biological_processreticulophagy
A0090114biological_processCOPII-coated vesicle budding
A1900101biological_processregulation of endoplasmic reticulum unfolded protein response
A1990261biological_processpre-mRNA catabolic process
B0000045biological_processautophagosome assembly
B0000407cellular_componentphagophore assembly site
B0000425biological_processpexophagy
B0003674molecular_functionmolecular_function
B0005515molecular_functionprotein binding
B0005794cellular_componentGolgi apparatus
B0005829cellular_componentcytosol
B0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
B0006914biological_processautophagy
B0016236biological_processmacroautophagy
B0030435biological_processsporulation resulting in formation of a cellular spore
B0031410cellular_componentcytoplasmic vesicle
B0032258biological_processcytoplasm to vacuole targeting by the Cvt pathway
B0034497biological_processprotein localization to phagophore assembly site
B0034727biological_processpiecemeal microautophagy of the nucleus
B0051321biological_processmeiotic cell cycle
B0071255biological_processCvt vesicle assembly
B1990072cellular_componentTRAPPIII protein complex
E0000407cellular_componentphagophore assembly site
E0003674molecular_functionmolecular_function
E0005515molecular_functionprotein binding
E0005783cellular_componentendoplasmic reticulum
E0005794cellular_componentGolgi apparatus
E0005801cellular_componentcis-Golgi network
E0005802cellular_componenttrans-Golgi network
E0005829cellular_componentcytosol
E0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
E0006891biological_processintra-Golgi vesicle-mediated transport
E0006914biological_processautophagy
E0016192biological_processvesicle-mediated transport
E0016236biological_processmacroautophagy
E0016239biological_processpositive regulation of macroautophagy
E0030008cellular_componentTRAPP complex
E0031503biological_processprotein-containing complex localization
E0034497biological_processprotein localization to phagophore assembly site
E0042147biological_processretrograde transport, endosome to Golgi
E0043087biological_processregulation of GTPase activity
E0048193biological_processGolgi vesicle transport
E0065003biological_processprotein-containing complex assembly
E1990070cellular_componentTRAPPI protein complex
E1990071cellular_componentTRAPPII protein complex
E1990072cellular_componentTRAPPIII protein complex
F0000407cellular_componentphagophore assembly site
F0005085molecular_functionguanyl-nucleotide exchange factor activity
F0005515molecular_functionprotein binding
F0005783cellular_componentendoplasmic reticulum
F0005794cellular_componentGolgi apparatus
F0005829cellular_componentcytosol
F0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
F0006891biological_processintra-Golgi vesicle-mediated transport
F0006914biological_processautophagy
F0006995biological_processcellular response to nitrogen starvation
F0016192biological_processvesicle-mediated transport
F0016236biological_processmacroautophagy
F0030008cellular_componentTRAPP complex
F0032258biological_processcytoplasm to vacuole targeting by the Cvt pathway
F0033106cellular_componentcis-Golgi network membrane
F0042147biological_processretrograde transport, endosome to Golgi
F0048193biological_processGolgi vesicle transport
F1990070cellular_componentTRAPPI protein complex
F1990071cellular_componentTRAPPII protein complex
F1990072cellular_componentTRAPPIII protein complex
G0000407cellular_componentphagophore assembly site
G0005085molecular_functionguanyl-nucleotide exchange factor activity
G0005515molecular_functionprotein binding
G0005783cellular_componentendoplasmic reticulum
G0005794cellular_componentGolgi apparatus
G0005829cellular_componentcytosol
G0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
G0006891biological_processintra-Golgi vesicle-mediated transport
G0006914biological_processautophagy
G0016192biological_processvesicle-mediated transport
G0016236biological_processmacroautophagy
G0030008cellular_componentTRAPP complex
G0032991cellular_componentprotein-containing complex
G0042147biological_processretrograde transport, endosome to Golgi
G0048193biological_processGolgi vesicle transport
G1990070cellular_componentTRAPPI protein complex
G1990071cellular_componentTRAPPII protein complex
G1990072cellular_componentTRAPPIII protein complex
H0000407cellular_componentphagophore assembly site
H0005085molecular_functionguanyl-nucleotide exchange factor activity
H0005515molecular_functionprotein binding
H0005783cellular_componentendoplasmic reticulum
H0005794cellular_componentGolgi apparatus
H0005829cellular_componentcytosol
H0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
H0006891biological_processintra-Golgi vesicle-mediated transport
H0006914biological_processautophagy
H0016192biological_processvesicle-mediated transport
H0016236biological_processmacroautophagy
H0030008cellular_componentTRAPP complex
H0032991cellular_componentprotein-containing complex
H0042147biological_processretrograde transport, endosome to Golgi
H0048193biological_processGolgi vesicle transport
H0051276biological_processchromosome organization
H1990070cellular_componentTRAPPI protein complex
H1990071cellular_componentTRAPPII protein complex
H1990072cellular_componentTRAPPIII protein complex
I0000407cellular_componentphagophore assembly site
I0005085molecular_functionguanyl-nucleotide exchange factor activity
I0005515molecular_functionprotein binding
I0005783cellular_componentendoplasmic reticulum
I0005794cellular_componentGolgi apparatus
I0005829cellular_componentcytosol
I0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
I0006891biological_processintra-Golgi vesicle-mediated transport
I0006914biological_processautophagy
I0006995biological_processcellular response to nitrogen starvation
I0016192biological_processvesicle-mediated transport
I0016236biological_processmacroautophagy
I0030008cellular_componentTRAPP complex
I0032258biological_processcytoplasm to vacuole targeting by the Cvt pathway
I0033106cellular_componentcis-Golgi network membrane
I0042147biological_processretrograde transport, endosome to Golgi
I0048193biological_processGolgi vesicle transport
I1990070cellular_componentTRAPPI protein complex
I1990071cellular_componentTRAPPII protein complex
I1990072cellular_componentTRAPPIII protein complex
J0000407cellular_componentphagophore assembly site
J0005085molecular_functionguanyl-nucleotide exchange factor activity
J0005515molecular_functionprotein binding
J0005783cellular_componentendoplasmic reticulum
J0005794cellular_componentGolgi apparatus
J0005829cellular_componentcytosol
J0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
J0006891biological_processintra-Golgi vesicle-mediated transport
J0006914biological_processautophagy
J0016192biological_processvesicle-mediated transport
J0016236biological_processmacroautophagy
J0030008cellular_componentTRAPP complex
J0042147biological_processretrograde transport, endosome to Golgi
J0048193biological_processGolgi vesicle transport
J1990070cellular_componentTRAPPI protein complex
J1990071cellular_componentTRAPPII protein complex
J1990072cellular_componentTRAPPIII protein complex
K0000407cellular_componentphagophore assembly site
K0003674molecular_functionmolecular_function
K0005515molecular_functionprotein binding
K0005634cellular_componentnucleus
K0005737cellular_componentcytoplasm
K0005783cellular_componentendoplasmic reticulum
K0005794cellular_componentGolgi apparatus
K0005829cellular_componentcytosol
K0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
K0006891biological_processintra-Golgi vesicle-mediated transport
K0006914biological_processautophagy
K0016192biological_processvesicle-mediated transport
K0016236biological_processmacroautophagy
K0030008cellular_componentTRAPP complex
K0032991cellular_componentprotein-containing complex
K0042147biological_processretrograde transport, endosome to Golgi
K0065003biological_processprotein-containing complex assembly
K1990070cellular_componentTRAPPI protein complex
K1990071cellular_componentTRAPPII protein complex
K1990072cellular_componentTRAPPIII protein complex
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsLipidation: {"description":"S-palmitoyl cysteine","evidences":[{"source":"PubMed","id":"15692564","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues17
DetailsRegion: {"description":"Interaction with GDI1","evidences":[{"source":"PubMed","id":"14576435","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsMotif: {"description":"Effector region","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues9
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"14576435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16034420","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16395334","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1UKV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YZN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BCG","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"16034420","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1YZN","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues2
DetailsLipidation: {"description":"S-palmitoyl cysteine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22106047","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

243083

PDB entries from 2025-10-15

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