7AHZ
Crystal structure of Western clawed frog MDM2 RING domain homodimer bound to UbcH5B-Ub
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AAA, DDD, GGG, JJJ | E3 ubiquitin-protein ligase Mdm2 | polymer | 71 | 7908.4 | 4 | UniProt (Q6P3Q9) Pfam (PF13920) In PDB | Xenopus tropicalis (Western clawed frog) | |
2 | BBB, EEE, HHH, KKK | Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) | polymer | 147 | 16851.4 | 4 | UniProt (Q28EY6) Pfam (PF00179) In PDB | Xenopus tropicalis (Western clawed frog) | Ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog) |
3 | CCC, FFF, III, LLL | Polyubiquitin-B | polymer | 81 | 8922.1 | 4 | UniProt (P0CG47) Pfam (PF00240) In PDB | Homo sapiens (Human) | |
4 | AAA, DDD, GGG, JJJ | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
5 | HHH | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
6 | water | water | 18.0 | 356 | Chemie (HOH) |
Sequence modifications
AAA, DDD, GGG, JJJ: 414 - 482 (UniProt: Q6P3Q9)
BBB, EEE, HHH, KKK: 1 - 147 (UniProt: Q28EY6)
CCC, FFF, III, LLL: -2 - 76 (UniProt: P0CG47)
PDB | External Database | Details |
---|---|---|
Gly 412 | - | expression tag |
Ser 413 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Arg 22 | Ser 22 | engineered mutation |
Lys 85 | Cys 85 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Gly -4 | - | expression tag |
Ser -3 | - | expression tag |
Ser 0 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 134727.8 | |
Non-Polymers* | Number of molecules | 9 |
Total formula weight | 558.7 | |
All* | Total formula weight | 135286.5 |