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6VKP

Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dG

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, D
(P, B)
DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*AP*GP*AP*TP*TP*CP*G)-3')polymer144409.92Homo sapiens
2B, E
(T, C)
DNA (5'-D(*TP*TP*CP*AP*TP*(A38)P*GP*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*CP*C)-3')polymer195706.72Homo sapiens
3C, F
(A, D)
DNA polymerase IVpolymer34139019.52UniProt (A0A0E3K6E9)
Pfam (PF00817)
Pfam (PF11798)
Pfam (PF11799)
UniProt (by SIFTS) (Q97W02)
Saccharolobus solfataricusPol IV
4G, H, J, K
(A, D)
MAGNESIUM IONnon-polymer24.34Chemie (MG)
5I, L
(A, D)
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosinenon-polymer490.22Chemie (DZ4)
6M, N, O, P, Q...
(P, T, A, B, C...)
waterwater18.065Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight98272.2
Non-Polymers*Number of molecules6
Total formula weight1077.6
All*Total formula weight99349.8
*Water molecules are not included.

246031

PDB entries from 2025-12-10

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