6JEZ

Covalent labeling of rVDR-LBD by turn-on fluorescent probe mediated by conjugate addition and cyclization

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	Vitamin D3 receptor,Vitamin D3 receptor	polymer	271	30595.0	1	UniProt (P13053) Pfam (PF00104) In PDB	Rattus norvegicus (Rat)	VDR,1,25-dihydroxyvitamin D3 receptor,Nuclear receptor subfamily 1 group I member 1,VDR,1,25-dihydroxyvitamin D3 receptor,Nuclear receptor subfamily 1 group I member 1
2	C	Mediator of RNA polymerase II transcription subunit 1	polymer	13	1570.9	1	UniProt (Q15648) In PDB	Homo sapiens	Activator-recruited cofactor 205 kDa component,ARC205,Mediator complex subunit 1,Peroxisome proliferator-activated receptor-binding protein,PPAR-binding protein,Thyroid hormone receptor-associated protein complex 220 kDa component,Trap220,Thyroid receptor-interacting protein 2,TRIP-2,Vitamin D receptor-interacting protein complex component DRIP205,p53 regulatory protein RB18A
3	A	(1R,3R)-5-(2-((1R,3aS,7aR,E)-1-((R)-6-hydroxy-6-methylheptan-2-yl)-7a-methyloctahydro-4H-inden-4-ylidene)ethylidene)-2- methylenecyclohexane-1,3-diol	non-polymer		416.6	1	Chemie (YSV)
4	A	7-(diethylamino)chromen-2-one	non-polymer		217.3	1	Chemie (EJO)
5		water	water		18.0	61	Chemie (HOH)

Sequence modifications

A: 116 - 210 (UniProt: P13053)

PDB	External Database	Details
Gly 106	-	expression tag
Ser 107	-	expression tag
His 108	-	expression tag
Met 109	-	expression tag
Gly 110	-	expression tag
Ser 111	-	expression tag
Pro 112	-	expression tag
Asn 113	-	expression tag
Ser 114	-	expression tag
Pro 115	-	expression tag

A: 213 - 423 (UniProt: P13053)

PDB	External Database	Details
Gly 211	-	linker
Ser 212	-	linker

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	32165.9
Non-Polymers*	Number of molecules	2
	Total formula weight	633.9
All*	Total formula weight	32799.8

*Water molecules are not included.