6H8K
Crystal structure of a variant (Q133C in PSST) of Yarrowia lipolytica complex I
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | NADH-ubiquinone oxidoreductase chain 1 | polymer | 335 | 37702.5 | 1 | UniProt (Q9B6E8) Pfam (PF00146) | Yarrowia lipolytica (Candida lipolytica) | NADH dehydrogenase subunit 1 |
| 2 | B (2) | NADH-ubiquinone oxidoreductase chain 2,NADH dehydrogenase subunit 2 | polymer | 434 | 46373.0 | 1 | UniProt (Q9B6C8) Pfam (PF00361) | Yarrowia lipolytica (Candida lipolytica) | NADH dehydrogenase subunit 2 |
| 3 | C (3) | NADH-ubiquinone oxidoreductase chain 3 | polymer | 110 | 12351.8 | 1 | UniProt (Q9B6C7) Pfam (PF00507) | Yarrowia lipolytica (Candida lipolytica) | NADH dehydrogenase subunit 3 |
| 4 | D (4) | NADH-ubiquinone oxidoreductase chain 4 | polymer | 470 | 46528.7 | 1 | UniProt (Q9B6D6) Pfam (PF00361) | Yarrowia lipolytica (Candida lipolytica) | NADH dehydrogenase subunit 4 |
| 5 | E (5) | NADH-ubiquinone oxidoreductase chain 5 | polymer | 616 | 61395.5 | 1 | UniProt (Q9B6D3) Pfam (PF00662) Pfam (PF00361) | Yarrowia lipolytica (Candida lipolytica) | |
| 6 | F (6) | NADH-ubiquinone oxidoreductase chain 6 | polymer | 184 | 20175.4 | 1 | UniProt (Q9B6E9) Pfam (PF00499) | Yarrowia lipolytica (Candida lipolytica) | NADH dehydrogenase subunit 6 |
| 7 | G (A) | NUAM protein | polymer | 634 | 56416.9 | 1 | UniProt (Q9UUU3) Pfam (PF22117) Pfam (PF13510) Pfam (PF10588) | Yarrowia lipolytica (Candida lipolytica) | |
| 8 | H (B) | NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial | polymer | 370 | 34323.2 | 1 | UniProt (Q9UUU2) Pfam (PF01512) Pfam (PF22461) Pfam (PF10589) | Yarrowia lipolytica (Candida lipolytica) | |
| 9 | I (C) | NUCM protein | polymer | 383 | 43255.6 | 1 | UniProt (Q9UUU1) Pfam (PF00346) | Yarrowia lipolytica (Candida lipolytica) | |
| 10 | J (E) | NUEM protein | polymer | 195 | 16613.4 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 11 | K (G) | NUGM protein | polymer | 133 | 13497.8 | 1 | UniProt (Q9UUU0) Pfam (PF00329) | Yarrowia lipolytica (Candida lipolytica) | |
| 12 | L (H) | Subunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I) | polymer | 154 | 13304.1 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 13 | M (I) | Subunit NUIM of NADH:Ubiquinone Oxidoreductase (Complex I) | polymer | 140 | 14427.0 | 1 | UniProt (Q9UUT8) Pfam (PF12838) | Yarrowia lipolytica (Candida lipolytica) | Subunit NUIM of protein NADH:Ubiquinone oxidoreductase |
| 14 | N (K) | Subunit NUKM of protein NADH:Ubiquinone Oxidoreductase (Complex I) | polymer | 147 | 16513.2 | 1 | UniProt (Q9UUT7) Pfam (PF01058) | Yarrowia lipolytica (Candida lipolytica) | Subunit NUKM of protein NADH:Ubiquinone oxidoreductase |
| 15 | O (L) | NADH-ubiquinone oxidoreductase chain 4L | polymer | 79 | 8741.6 | 1 | UniProt (Q9B6D4) Pfam (PF00420) | Yarrowia lipolytica (Candida lipolytica) | NADH dehydrogenase subunit 4L |
| 16 | P, XA (Z, r) | Unknown polypeptide | polymer | 17 | 1464.8 | 2 | Yarrowia lipolytica (Candida lipolytica) | ||
| 17 | LB, Q (Y, AF) | Unknown polypeptide | polymer | 40 | 3422.2 | 2 | Yarrowia lipolytica (Candida lipolytica) | ||
| 18 | R (U) | Unknown polypeptide | polymer | 10 | 869.1 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 19 | S (X) | Unknown polypeptide | polymer | 57 | 4869.0 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 20 | T (W) | Unknown polypeptide | polymer | 54 | 4613.7 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 21 | U (V) | Unknown polypeptide | polymer | 63 | 5379.6 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 22 | OB, SA, V (T, m, AI) | Unknown polypeptide | polymer | 20 | 1720.1 | 3 | Yarrowia lipolytica (Candida lipolytica) | ||
| 23 | PB, RB, W (S, AJ, AL) | Unknown polypeptide | polymer | 19 | 1635.0 | 3 | Yarrowia lipolytica (Candida lipolytica) | ||
| 24 | X (R) | Unknown polypeptide | polymer | 50 | 4273.3 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 25 | Y (Q) | Unknown polypeptide | polymer | 70 | 5975.4 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 26 | Z (P) | Unknown polypeptide | polymer | 28 | 2401.0 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 27 | AA, IB, LA, NB, SB (F, f, AC, AH, AM) | Unknown polypeptide | polymer | 18 | 1549.9 | 5 | Yarrowia lipolytica (Candida lipolytica) | ||
| 28 | BA, RA (O, l) | Unknown polypeptide | polymer | 25 | 2145.6 | 2 | Yarrowia lipolytica (Candida lipolytica) | ||
| 29 | CA (M) | Unknown polypeptide | polymer | 51 | 4358.4 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 30 | DA (D) | Unknown polypeptide | polymer | 30 | 2571.2 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 31 | EA (J) | Unknown polypeptide | polymer | 69 | 5890.3 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 32 | FA (N) | Unknown polypeptide | polymer | 15 | 1294.6 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 33 | GA, OA (a, i) | Unknown polypeptide | polymer | 26 | 2230.7 | 2 | Yarrowia lipolytica (Candida lipolytica) | ||
| 34 | HA (b) | Unknown polypeptide | polymer | 22 | 1890.3 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 35 | IA, KB, MA, QB, UB (c, g, AE, AK, AO) | Unknown polypeptide | polymer | 9 | 784.0 | 5 | Yarrowia lipolytica (Candida lipolytica) | ||
| 36 | HB, JA, TB, UA (d, o, AB, AN) | Unknown polypeptide | polymer | 16 | 1379.7 | 4 | Yarrowia lipolytica (Candida lipolytica) | ||
| 37 | CB, FB, KA (e, w, z) | Unknown polypeptide | polymer | 13 | 1124.4 | 3 | Yarrowia lipolytica (Candida lipolytica) | ||
| 38 | NA (h) | Unknown polypeptide | polymer | 47 | 4017.9 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 39 | PA (j) | Unknown polypeptide | polymer | 48 | 4103.0 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 40 | QA, YA (k, s) | Unknown polypeptide | polymer | 23 | 1975.4 | 2 | Yarrowia lipolytica (Candida lipolytica) | ||
| 41 | TA, WA (n, q) | Unknown polypeptide | polymer | 36 | 3081.8 | 2 | Yarrowia lipolytica (Candida lipolytica) | ||
| 42 | VA (p) | Unknown polypeptide | polymer | 76 | 6486.0 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 43 | ZA (t) | Unknown polypeptide | polymer | 45 | 3847.7 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 44 | AB (u) | Unknown polypeptide | polymer | 32 | 2741.4 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 45 | BB, EB (v, y) | Unknown polypeptide | polymer | 11 | 954.2 | 2 | Yarrowia lipolytica (Candida lipolytica) | ||
| 46 | DB, MB (x, AG) | Unknown polypeptide | polymer | 8 | 698.9 | 2 | Yarrowia lipolytica (Candida lipolytica) | ||
| 47 | GB (AA) | Unknown polypeptide | polymer | 58 | 4954.1 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 48 | JB (AD) | Unknown polypeptide | polymer | 39 | 3337.1 | 1 | Yarrowia lipolytica (Candida lipolytica) | ||
| 49 | VB, ZB (A, H) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 2 | Chemie (FES) | |||
| 50 | AC, BC, CC, WB, XB... (I, K, A, B) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 6 | Chemie (SF4) |
Sequence modifications
2: 1 - 84 (UniProt: Q9B6C8)
2: 97 - 119 (PDB: 6H8K)
2: 120 - 250 (UniProt: Q9B6C8)
2: 251 - 260 (PDB: 6H8K)
2: 261 - 328 (UniProt: Q9B6C8)
2: 329 - 359 (PDB: 6H8K)
2: 360 - 415 (UniProt: Q9B6C8)
2: 416 - 479 (PDB: 6H8K)
4: 1 - 135 (PDB: 6H8K)
4: 136 - 325 (UniProt: Q9B6D6)
4: 326 - 361 (PDB: 6H8K)
4: 362 - 408 (UniProt: Q9B6D6)
4: 409 - 451 (PDB: 6H8K)
4: 452 - 471 (UniProt: Q9B6D6)
4: 472 - 486 (PDB: 6H8K)
5: 1 - 70 (PDB: 6H8K)
5: 71 - 191 (UniProt: Q9B6D3)
5: 192 - 204 (PDB: 6H8K)
5: 205 - 250 (UniProt: Q9B6D3)
5: 251 - 294 (PDB: 6H8K)
5: 295 - 399 (UniProt: Q9B6D3)
5: 400 - 406 (PDB: 6H8K)
5: 407 - 426 (UniProt: Q9B6D3)
5: 427 - 440 (PDB: 6H8K)
5: 441 - 456 (UniProt: Q9B6D3)
5: 457 - 540 (PDB: 6H8K)
5: 541 - 565 (UniProt: Q9B6D3)
5: 566 - 577 (PDB: 6H8K)
5: 578 - 616 (UniProt: Q9B6D3)
6: 2 - 10 (PDB: 6H8K)
6: 11 - 185 (UniProt: Q9B6E9)
A: 36 - 68 (PDB: 6H8K)
A: 69 - 148 (UniProt: Q9UUU3)
A: 152 - 181 (PDB: 6H8K)
A: 183 - 199 (UniProt: Q9UUU3)
A: 200 - 737 (PDB: 6H8K)
B: 43 - 87 (PDB: 6H8K)
B: 92 - 109 (UniProt: Q9UUU2)
B: 115 - 120 (PDB: 6H8K)
B: 125 - 155 (UniProt: Q9UUU2)
B: 159 - 380 (PDB: 6H8K)
B: 381 - 434 (UniProt: Q9UUU2)
B: 432 - 461 (PDB: 6H8K)
G: 69 - 90 (UniProt: Q9UUU0)
G: 91 - 162 (PDB: 6H8K)
G: 163 - 209 (UniProt: Q9UUU0)
I: 72 - 92 (UniProt: Q9UUT8)
I: 103 - 120 (PDB: 6H8K)
I: 128 - 196 (UniProt: Q9UUT8)
I: 194 - 250 (PDB: 6H8K)
K: 59 - 205 (UniProt: Q9UUT7)
2: 97 - 119 (PDB: 6H8K)
2: 120 - 250 (UniProt: Q9B6C8)
2: 251 - 260 (PDB: 6H8K)
2: 261 - 328 (UniProt: Q9B6C8)
2: 329 - 359 (PDB: 6H8K)
2: 360 - 415 (UniProt: Q9B6C8)
2: 416 - 479 (PDB: 6H8K)
4: 1 - 135 (PDB: 6H8K)
4: 136 - 325 (UniProt: Q9B6D6)
4: 326 - 361 (PDB: 6H8K)
4: 362 - 408 (UniProt: Q9B6D6)
4: 409 - 451 (PDB: 6H8K)
4: 452 - 471 (UniProt: Q9B6D6)
4: 472 - 486 (PDB: 6H8K)
5: 1 - 70 (PDB: 6H8K)
5: 71 - 191 (UniProt: Q9B6D3)
5: 192 - 204 (PDB: 6H8K)
5: 205 - 250 (UniProt: Q9B6D3)
5: 251 - 294 (PDB: 6H8K)
5: 295 - 399 (UniProt: Q9B6D3)
5: 400 - 406 (PDB: 6H8K)
5: 407 - 426 (UniProt: Q9B6D3)
5: 427 - 440 (PDB: 6H8K)
5: 441 - 456 (UniProt: Q9B6D3)
5: 457 - 540 (PDB: 6H8K)
5: 541 - 565 (UniProt: Q9B6D3)
5: 566 - 577 (PDB: 6H8K)
5: 578 - 616 (UniProt: Q9B6D3)
6: 2 - 10 (PDB: 6H8K)
6: 11 - 185 (UniProt: Q9B6E9)
A: 36 - 68 (PDB: 6H8K)
A: 69 - 148 (UniProt: Q9UUU3)
A: 152 - 181 (PDB: 6H8K)
A: 183 - 199 (UniProt: Q9UUU3)
A: 200 - 737 (PDB: 6H8K)
B: 43 - 87 (PDB: 6H8K)
B: 92 - 109 (UniProt: Q9UUU2)
B: 115 - 120 (PDB: 6H8K)
B: 125 - 155 (UniProt: Q9UUU2)
B: 159 - 380 (PDB: 6H8K)
B: 381 - 434 (UniProt: Q9UUU2)
B: 432 - 461 (PDB: 6H8K)
G: 69 - 90 (UniProt: Q9UUU0)
G: 91 - 162 (PDB: 6H8K)
G: 163 - 209 (UniProt: Q9UUU0)
I: 72 - 92 (UniProt: Q9UUT8)
I: 103 - 120 (PDB: 6H8K)
I: 128 - 196 (UniProt: Q9UUT8)
I: 194 - 250 (PDB: 6H8K)
K: 59 - 205 (UniProt: Q9UUT7)
| PDB | External Database | Details |
|---|---|---|
| Cys 133 | Gln 133 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 73 |
| Total formula weight | 578066.4 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 2461.5 | |
| All* | Total formula weight | 580527.8 |
