5TVP
SUMO2 bound to Mouse Tdp2 catalytic domain with a 5'-phosphorylated DNA ternary complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, F, H, J... (I, O, E, G, B...) | Tyrosyl-DNA phosphodiesterase 2 | polymer | 256 | 28905.2 | 8 | UniProt (Q9JJX7) Pfam (PF03372) | Mus musculus (Mouse) | Tyr-DNA phosphodiesterase 2,5'-tyrosyl-DNA phosphodiesterase,5'-Tyr-DNA phosphodiesterase,TRAF and TNF receptor-associated protein |
| 2 | B, D, G, I, K... (J, P, F, H, C...) | DNA (5'-D(P*CP*CP*GP*AP*AP*TP*TP*CP*G)-3') | polymer | 9 | 2715.8 | 8 | Homo sapiens | ||
| 3 | E (Q) | Small ubiquitin-related modifier 2 | polymer | 81 | 9365.5 | 1 | UniProt (P61957) Pfam (PF11976) | Mus musculus (Mouse) | SUMO-2,SMT3 homolog 2,Ubiquitin-like protein SMT3B,Smt3B |
| 4 | AA, BA, GA, JA, LA... (E, G, B, A, K...) | PHOSPHATE ION | non-polymer | 95.0 | 9 | Chemie (PO4) | |||
| 5 | CA, DA, EA, FA, HA... (G, B, A, K, I...) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 13 | Chemie (EDO) | |||
| 6 | IA, PA, Z (B, M, E) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
| 7 | AB, BB, CB, DB, EB... (C, A, D, K, L...) | water | water | 18.0 | 690 | Chemie (HOH) |
Sequence modifications
I, O, E, G, B, A, K, M: 118 - 370 (UniProt: Q9JJX7)
Q: 10 - 88 (UniProt: P61957)
| PDB | External Database | Details |
|---|---|---|
| Ser 115 | - | expression tag |
| Lys 116 | - | expression tag |
| Gly 117 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Ser 8 | - | expression tag |
| Asn 9 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 17 |
| Total formula weight | 262333.7 | |
| Non-Polymers* | Number of molecules | 25 |
| Total formula weight | 1768.0 | |
| All* | Total formula weight | 264101.7 |
