5F9F
Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G, I... (A, C, E, G, I...) | Probable ATP-dependent RNA helicase DDX58 | polymer | 695 | 79594.7 | 6 | UniProt (O95786) Pfam (PF00270) Pfam (PF18119) Pfam (PF00271) Pfam (PF11648) | Homo sapiens (Human) | DEAD box protein 58,RIG-I-like receptor 1,RLR-1,Retinoic acid-inducible gene 1 protein,RIG-1,Retinoic acid-inducible gene I protein,RIG-I |
| 2 | B, D, F, H, J... (B, D, F, H, J...) | RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | polymer | 24 | 7649.6 | 6 | synthetic construct | 5'OH HP RNA | |
| 3 | BA, HA, LA, M, R... (G, I, K, A, C...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
| 4 | GA, IA, JA, MA, N... (H, I, K, A, C) | MAGNESIUM ION | non-polymer | 24.3 | 6 | Chemie (MG) | |||
| 5 | CA, NA, O, Y (G, K, A, E) | TRIFLUOROETHANOL | non-polymer | 100.0 | 4 | Chemie (ETF) | |||
| 6 | AA, DA, EA, FA, KA... (E, G, I, K, A...) | (R,R)-2,3-BUTANEDIOL | non-polymer | 90.1 | 13 | Chemie (BU3) | |||
| 7 | AB, PA, QA, RA, SA... (L, A, B, C, D...) | water | water | 18.0 | 126 | Chemie (HOH) |
Sequence modifications
A, C, E, G, I, K: 232 - 925 (UniProt: O95786)
| PDB | External Database | Details |
|---|---|---|
| Ser 231 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 523465.8 | |
| Non-Polymers* | Number of molecules | 29 |
| Total formula weight | 2110.0 | |
| All* | Total formula weight | 525575.8 |
