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5F8A

Crystal structure of the ternary EcoRV-DNA-Lu complex with uncleaved DNA substrate. Lanthanide binding to EcoRV-DNA complex inhibits cleavage.

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(C, D)
DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*T)-3')polymer123660.42synthetic construct
2C, D
(A, B)
Type-2 restriction enzyme EcoRVpolymer24428559.22UniProt (P04390)
Pfam (PF09233)
Escherichia coliR.EcoRV,Endonuclease EcoRV,Type II restriction enzyme EcoRV
3E, H
(A, B)
LUTETIUM (III) IONnon-polymer175.02Chemie (LU)
4F, I
(A, B)
SODIUM IONnon-polymer23.02Chemie (NA)
5G, J
(A, B)
1,2-ETHANEDIOLnon-polymer62.12Chemie (EDO)
6K, L, M, N
(C, D, A, B)
waterwater18.0301Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight64439.2
Non-Polymers*Number of molecules6
Total formula weight520.1
All*Total formula weight64959.2
*Water molecules are not included.

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PDB entries from 2025-06-25

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