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5F8A

Crystal structure of the ternary EcoRV-DNA-Lu complex with uncleaved DNA substrate. Lanthanide binding to EcoRV-DNA complex inhibits cleavage.

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0004519molecular_functionendonuclease activity
A0009036molecular_functiontype II site-specific deoxyribonuclease activity
A0009307biological_processDNA restriction-modification system
A0046872molecular_functionmetal ion binding
B0003677molecular_functionDNA binding
B0004519molecular_functionendonuclease activity
B0009036molecular_functiontype II site-specific deoxyribonuclease activity
B0009307biological_processDNA restriction-modification system
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue LU A 301
ChainResidue
AGLU45
AASP74
AHOH409
AHOH422
AHOH441
AHOH484
AHOH523

site_idAC2
Number of Residues4
Detailsbinding site for residue NA A 302
ChainResidue
AASP19
AEDO303
AASN15
ATYR18

site_idAC3
Number of Residues7
Detailsbinding site for residue EDO A 303
ChainResidue
AASN15
ATYR18
AASP19
AVAL20
APHE44
APHE47
ANA302

site_idAC4
Number of Residues6
Detailsbinding site for residue LU B 301
ChainResidue
BGLU45
BASP74
BHOH410
BHOH459
BHOH464
BHOH488

site_idAC5
Number of Residues4
Detailsbinding site for residue NA B 302
ChainResidue
BASN15
BTYR18
BASP19
BEDO303

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO B 303
ChainResidue
BASN15
BTYR18
BASP19
BVAL20
BNA302

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE:
ChainResidueDetails
AASP74
AASP90
ALYS92
BASP74
BASP90
BLYS92

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING:
ChainResidueDetails
BASP74
BASP90
AASP90
BGLU45
AGLU45
AASP74

221051

PDB entries from 2024-06-12

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