5EYA
TRIM25 RING domain in complex with Ubc13-Ub conjugate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (A, B) | Ubiquitin-conjugating enzyme E2 N | polymer | 152 | 17183.8 | 2 | UniProt (P61088) Pfam (PF00179) | Homo sapiens (Human) | Bendless-like ubiquitin-conjugating enzyme,E2 ubiquitin-conjugating enzyme N,Ubc13,UbcH13,Ubiquitin carrier protein N,Ubiquitin-protein ligase N |
| 2 | B, C (F, G) | Tripartite motif-containing 25 variant | polymer | 86 | 9504.9 | 2 | UniProt (Q59GW5) Pfam (PF13445) UniProt (by SIFTS) (Q14258) | Homo sapiens (Human) | |
| 3 | E, F (C, D) | Polyubiquitin-B | polymer | 76 | 8576.8 | 2 | UniProt (P0CG47) Pfam (PF00240) | Homo sapiens (Human) | |
| 4 | G, H, I, J (F, G) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 5 | K, L, M, N, O... (A, F, G, B, C...) | water | water | 18.0 | 180 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 152 (UniProt: P61088)
F, G: -2 - 83 (UniProt: Q59GW5)
| PDB | External Database | Details |
|---|---|---|
| Lys 87 | Cys 87 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| His 0 | Ala 14 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 70531.1 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 261.6 | |
| All* | Total formula weight | 70792.7 |
