5DFZ
Structure of Vps34 complex II from S. cerevisiae.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Vacuolar protein sorting-associated protein 38 | polymer | 441 | 51072.9 | 1 | UniProt (Q05919) Pfam (PF17649) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | |
2 | C | Phosphatidylinositol 3-kinase VPS34 | polymer | 875 | 100973.1 | 1 | UniProt (P22543) Pfam (PF00792) Pfam (PF00613) Pfam (PF00454) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PtdIns-3-kinase VPS34,Carboxypeptidase Y-deficient protein 15,Vacuolar protein sorting-associated protein 34,Vacuolar protein-targeting protein 29 |
3 | B | Serine/threonine-protein kinase VPS15 | polymer | 1460 | 167082.5 | 1 | UniProt (P22219) Pfam (PF00069) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Golgi-retention defective mutant protein 8,Vacuolar protein sorting-associated protein 15 |
4 | E | Nanobody binding S. cerevisiae Vps34 | polymer | 124 | 13772.3 | 1 | Lama glama | ||
5 | D | Vacuolar protein sorting-associated protein 30 | polymer | 559 | 63400.7 | 1 | UniProt (Q02948) Pfam (PF17675) Pfam (PF04111) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Autophagy-related protein 6 |
6 | G | Putative N-terminal domain of S. cerevisiae Vps30 | polymer | 49 | 4188.2 | 1 | Saccharomyces cerevisiae (Baker's yeast) |
Sequence modifications
A: 1 - 439 (UniProt: Q05919)
C: 1 - 875 (UniProt: P22543)
B: 1 - 1454 (UniProt: P22219)
D: 1 - 557 (UniProt: Q02948)
PDB | External Database | Details |
---|---|---|
Gly 440 | - | expression tag |
Ser 441 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ala 2 | Ser 2 | conflict |
Gly 241 | Asp 241 | conflict |
PDB | External Database | Details |
---|---|---|
- | Ser 559 | deletion |
- | Met 560 | deletion |
- | Asp 561 | deletion |
- | Asn 562 | deletion |
- | Asn 563 | deletion |
- | Thr 564 | deletion |
- | Glu 565 | deletion |
- | Ile 566 | deletion |
- | Met 567 | deletion |
- | Glu 568 | deletion |
Gly 1455 | - | expression tag |
Ser 1456 | - | expression tag |
Ser 1457 | - | expression tag |
Arg 1458 | - | expression tag |
Pro 1459 | - | expression tag |
Thr 1460 | - | expression tag |
Thr 1461 | - | expression tag |
Ala 1462 | - | expression tag |
Ser 1463 | - | expression tag |
Glu 1464 | - | expression tag |
Asn 1465 | - | expression tag |
Leu 1466 | - | expression tag |
Tyr 1467 | - | expression tag |
Phe 1468 | - | expression tag |
Gln 1469 | - | expression tag |
Gly 1470 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ile 77 | Lys 77 | conflict |
Ala 467 | Thr 467 | conflict |
His 549 | Tyr 549 | conflict |
Gly 558 | - | expression tag |
Ser 559 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 400489.6 | |
All* | Total formula weight | 400489.6 |